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rifcsphigho2_01_scaffold_15857

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_15857_1

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comp(1..408)
DNA (408bp) protein (136aa)
glutamate dehydrogenase; K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] id=5049174 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Glutamate dehydrogenase/leucine dehydrogenase
rifcsphigho2_01_scaffold_15857_2

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comp(432..674)
DNA (243bp) protein (81aa)
Glutaredoxin-like protein, YruB-family n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SQB2_CLOPS
Glutaredoxin-like protein, YruB-family {ECO:0000313|EMBL:KHO53635.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
glutaredoxin
rifcsphigho2_01_scaffold_15857_3

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comp(855..1544)
DNA (690bp) protein (230aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN93524.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
rifcsphigho2_01_scaffold_15857_4
RIFOXYD2_FULL_RIF_OD1_10_43_10_curated, RIF-OD1-1, Parcubacteria, Bacteria

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2231..2413
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602) RepID=E2Q3Y6_STRC2
hypothetical protein Tax=RIFOXYD2_FULL_RIF_OD1_10_43_10_curated
hypothetical protein
rifcsphigho2_01_scaffold_15857_5
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2757..3953)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000382730D
Cell division protein FtsX
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
rifcsphigho2_01_scaffold_15857_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3980..5275)
DNA (1296bp) protein (432aa)
Putative uncharacterized protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12US8_METBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KCZ72702.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;"
hypothetical protein
rifcsphigho2_01_scaffold_15857_7
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5281..6027)
DNA (747bp) protein (249aa)
ABC transporter, ATPase subunit id=5800240 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Cell division transporter, ATP-binding protein FtsE
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
rifcsphigho2_01_scaffold_15857_8
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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6066..6605
DNA (540bp) protein (180aa)
transcriptional regulator, MarR family
"Winged helix" DNA-binding domain Tax=RBG_16_Micrarchaeota_36_9_curated
transcriptional regulator, MarR family id=5240652 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_15857_9

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6656..7486
DNA (831bp) protein (277aa)
endonuclease IV; K01151 deoxyribonuclease IV [EC:3.1.21.2] id=5049173 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Deoxyribonuclease IV {ECO:0000313|EMBL:KHO45164.1}; EC=3.1.21.2 {ECO:0000313|EMBL:KHO45164.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_01_scaffold_15857_10
RIFOXYC2_FULL_OP11_Curtissbacteria_41_11_curated, Curtissbacteria, Microgenomates, Bacteria

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comp(7579..8682)
DNA (1104bp) protein (368aa)
3-dehydroquinate synthase (EC:4.2.3.4) Tax=RIFOXYC2_FULL_OP11_Curtissbacteria_41_11_curated
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AD96_THEID
rifcsphigho2_01_scaffold_15857_11
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8741..9847)
DNA (1107bp) protein (369aa)
Thiol-disulfide isomerase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INX2_NITGG
thiol-disulfide isomerase-like thioredoxin
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:AIF85320.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" sour
rifcsphigho2_01_scaffold_15857_12

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comp(9844..10545)
DNA (702bp) protein (234aa)
cytochrome c biogenesis protein (EC:4.4.1.17); K06196 cytochrome c-type biogenesis protein id=5048645 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Cytochrome c-type biogenesis protein {ECO:0000313|EMBL:KHO45308.1}; EC=4.4.1.17 {ECO:0000313|EMBL:KHO45308.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
cytochrome c-type biogenesis protein (EC:4.4.1.17)
rifcsphigho2_01_scaffold_15857_13

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comp(10567..11307)
DNA (741bp) protein (247aa)
thioredoxin protein
Thioredoxin H-type,TRX-H {ECO:0000313|EMBL:KHO49868.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
id=5044456 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
rifcsphigho2_01_scaffold_15857_14

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comp(11317..11604)
DNA (288bp) protein (96aa)
Uncharacterized protein id=5048646 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45309.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_01_scaffold_15857_15

Not on your lists

comp(11632..11916)
DNA (285bp) protein (95aa)
regulatory protein ArsR id=5048647 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Regulatory protein ArsR {ECO:0000313|EMBL:KHO45310.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_01_scaffold_15857_16
GWA2_OD1_41_14_partial, Falkowbacteria, Parcubacteria, Bacteria

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comp(11942..12781)
DNA (840bp) protein (280aa)
High-affinity iron transporter {ECO:0000313|EMBL:KKR91711.1}; TaxID=1618635 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Falkowbacteria) bacterium GW2011_GWA2_41_14.;"
high-affinity iron transporter; K07243 high-affinity iron transporter id=5046616 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
high-affinity iron transporter
rifcsphigho2_01_scaffold_15857_17
unknown

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comp(12791..12940)
DNA (150bp) protein (50aa)

This feature has no annotations

rifcsphigho2_01_scaffold_15857_18
Ferroglobus placidus, Ferroglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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comp(13055..13495)
DNA (441bp) protein (147aa)
Transcriptional regulator, AsnC family n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S2C7_FERPA
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ADC66618.1}; TaxID=589924 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Ferroglobus.;" source="Ferroglobus
rifcsphigho2_01_scaffold_15857_19

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comp(13500..14201)
DNA (702bp) protein (234aa)
hypothetical protein
id=5046296 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46097.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_01_scaffold_15857_20
unknown

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14355..14549
DNA (195bp) protein (65aa)

This feature has no annotations

rifcsphigho2_01_scaffold_15857_21
unknown

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14536..14739
DNA (204bp) protein (68aa)

This feature has no annotations

Displaying 21 items

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