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rifcsphigho2_01_scaffold_9037

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_9037_1

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comp(1..120)
DNA (120bp) protein (40aa)
id=3230410 bin=GWB1_KAZAN_52_7 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWB1_KAZAN_52_7 organism_group=Kazan
Uncharacterized protein {ECO:0000313|EMBL:KKW24896.1}; TaxID=1620413 species="Bacteria.;" source="bacterium GW2011_GWC1_52_13.;"
rifcsphigho2_01_scaffold_9037_2

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comp(201..842)
DNA (642bp) protein (214aa)
Methyltransferase type 12 {ECO:0000313|EMBL:EFK94973.1}; EC=2.1.1.8 {ECO:0000313|EMBL:EFK94973.1};; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sedimen
Methyltransferase type 12 n=1 Tax=sediment metagenome RepID=D9PN92_9ZZZZ
type 12 methyltransferase
rifcsphigho2_01_scaffold_9037_3

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comp(851..2164)
DNA (1314bp) protein (438aa)
Radical SAM domain protein/B12 binding domain protein n=1 Tax=sediment metagenome RepID=D9PN93_9ZZZZ
Radical SAM domain protein/B12 binding domain protein {ECO:0000313|EMBL:EFK94974.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
radical SAM domain-containing protein
rifcsphigho2_01_scaffold_9037_4
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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2261..3229
DNA (969bp) protein (323aa)
AsnC/Lrp family transcriptional regulator Tax=RBG_13_Pacearchaeota_36_9_curated
leucine-responsive regulatory protein 1; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein id=5043670 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
rifcsphigho2_01_scaffold_9037_5
RBG_19FT_COMBO_OP11_43_10_curated, Microgenomates, Bacteria

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3270..4031
DNA (762bp) protein (254aa)
hypothetical protein
alias=gwc1_scaffold_1147_10 Tax=RBG_19FT_COMBO_OP11_43_10_curated
transmembrane_regions id=5240957 bin=GW2011_AR10_complete species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_9037_6

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4033..4740
DNA (708bp) protein (236aa)
Cytochrome c biogenesis protein transmembrane region {ECO:0000313|EMBL:KHO51600.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
cytochrome c biogenesis transmembrane protein
cytochrome c biogenesis transmembrane protein id=5240958 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_9037_7

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4742..5062
DNA (321bp) protein (107aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO51599.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
ATP-cone id=5240959 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_9037_8
unknown

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5236..6135
DNA (900bp) protein (300aa)

This feature has no annotations

No domain Jill Banfield (6/4/15)
rifcsphigho2_01_scaffold_9037_9
unknown

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6365..6454
DNA (90bp) protein (30aa)

This feature has no annotations

rifcsphigho2_01_scaffold_9037_10

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6584..7042
DNA (459bp) protein (153aa)
cytochrome c oxidase subunit II (EC:1.9.3.1)
Uncharacterized protein id=5799602 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF60933.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
Has active site for cyt oxidase subunit II Jill Banfield (6/4/15)
rifcsphigho2_01_scaffold_9037_11
unknown

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7047..7901
DNA (855bp) protein (285aa)

This feature has no annotations

No domains Jill Banfield (6/4/15)
rifcsphigho2_01_scaffold_9037_12
Ilyobacter polytropus, Ilyobacter, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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7898..8344
DNA (447bp) protein (149aa)
Cytochrome c oxidase subunit II n=1 Tax=Ilyobacter polytropus (strain DSM 2926 / CuHBu1) RepID=E3H951_ILYPC
cytochrome c oxidase subunit II
Cytochrome c oxidase subunit II {ECO:0000313|EMBL:ADO82750.1}; Flags: Precursor;; TaxID=572544 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Ilyobacter.;" source="Ilyobacter poly
Has active site Jill Banfield (6/4/15)
rifcsphigho2_01_scaffold_9037_13

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8355..9323
DNA (969bp) protein (323aa)
Cytochrome c biogenesis protein id=4010369 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Cytochrome c-type biogenesis protein {ECO:0000313|EMBL:KHO52449.1}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
cytochrome c biogenesis protein, transmembrane region
rifcsphigho2_01_scaffold_9037_14
RIFOXYD1_FULL_OD1_Magasanikbacteria_40_23_curated, Magasanikbacteria, Parcubacteria, Bacteria

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9421..10428
DNA (1008bp) protein (336aa)
hypothetical protein
id=4010372 Tax=RIFOXYD1_FULL_OD1_Magasanikbacteria_40_23_curated
id=4010372 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsphigho2_01_scaffold_9037_15
AR17, Woesearchaeaota, DPANN, Archaea

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10511..10705
DNA (195bp) protein (65aa)
Tax=AR17
rifcsphigho2_01_scaffold_9037_16
unknown

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10725..10937
DNA (213bp) protein (71aa)

This feature has no annotations

rifcsphigho2_01_scaffold_9037_17
AR9, Woesearchaeaota, DPANN, Archaea

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10950..11417
DNA (468bp) protein (156aa)
seg id=5041709 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR9
rifcsphigho2_01_scaffold_9037_18

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11426..12598
DNA (1173bp) protein (391aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO53671.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
id=5049633 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_01_scaffold_9037_19
uncultured Candidatus Nitrosocaldus sp., Candidatus Nitrosocaldus, Crenarchaeota, Archaea

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12611..13174
DNA (564bp) protein (188aa)
Uncharacterized protein id=4010368 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Putative uncharacterized protein HGP-15 {ECO:0000313|EMBL:BAE95215.1}; TaxID=766501 species="Archaea; Crenarchaeota; Candidatus Nitrosocaldus; environmental samples.;" source="uncultured Candidatus Ni
exported protein of unknown function
rifcsphigho2_01_scaffold_9037_20
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

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comp(13183..14808)
DNA (1626bp) protein (542aa)
hypothetical protein n=1 Tax=Mastigocladopsis repens RepID=UPI00030CA5B6 rbh
Cobalamin ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIJ82121.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothr
radical SAM protein
rifcsphigho2_01_scaffold_9037_21

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14903..15286
DNA (384bp) protein (128aa)
putR; proline dehydrogenase; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein id=5041688 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein {ECO:0000313|EMBL:KHO47940.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
Transcriptional regulator
Displaying 21 items

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