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rifcsphigho2_01_scaffold_5050

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_5050_1

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1..762
DNA (762bp) protein (254aa)
Transposase, IS4 family protein/SWIM domain fusion id=5043716 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Transposase, IS4 family protein/SWIM protein {ECO:0000313|EMBL:KHO47032.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
transposase family protein
rifcsphigho2_01_scaffold_5050_2
unknown

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836..1930
DNA (1095bp) protein (365aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5050_3
AR5, Aenigmarchaeota, DPANN, Archaea

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1989..5054
DNA (3066bp) protein (1022aa)
proteophosphoglycan 5 id=18248218 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
proteophosphoglycan 5 Tax=AR5
rifcsphigho2_01_scaffold_5050_4
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

5313..5654
DNA (342bp) protein (114aa)
Tax=AR11
rifcsphigho2_01_scaffold_5050_5
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5695..8598
DNA (2904bp) protein (968aa)
hypothetical protein n=1 Tax=Gilvimarinus chinensis RepID=UPI000369C165
Collagenase family protein {ECO:0000313|EMBL:KIE46673.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 27
PKD domain-containing protein
rifcsphigho2_01_scaffold_5050_6
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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8589..9806
DNA (1218bp) protein (406aa)
transmembrane_regions 7..26 id=1241674 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
transmembrane_regions 7..26 Tax=RBG_13_Chloroflexi_51_36_curated
rifcsphigho2_01_scaffold_5050_7
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

9853..10614
DNA (762bp) protein (254aa)
hypothetical protein Tax=AR11
rifcsphigho2_01_scaffold_5050_8
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(10660..11079)
DNA (420bp) protein (140aa)
Protein containing Nucleotide binding protein, PINc domain n=1 Tax=sediment metagenome RepID=D9PJC5_9ZZZZ
hypothetical protein Tax=CG_Woesearch_02
Protein containing Nucleotide binding protein, PINc protein
rifcsphigho2_01_scaffold_5050_9
Thermofilum sp. 1910b, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

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comp(11092..11349)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Thermofilum sp. 1910b RepID=S5Z9Y0_9CREN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGT36165.1}; TaxID=1365176 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermofilaceae; Thermofilum.;" source="Thermofilum sp. 1910b.;"
rifcsphigho2_01_scaffold_5050_10

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11425..12327
DNA (903bp) protein (301aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN91747.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative membrane-anchored cell surface protein id=2801210 bin=GWB1_CP_36_13 species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
hypothetical protein
rifcsphigho2_01_scaffold_5050_11
AR11, Woesearchaeaota, DPANN, Archaea

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comp(12337..14241)
DNA (1905bp) protein (635aa)
Amino acid permease-associated region Tax=AR11
integral membrane transport protein id=5044314 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
amino acid permease-associated protein
rifcsphigho2_01_scaffold_5050_12

Not on your lists


14330..15040
DNA (711bp) protein (237aa)
dph2; 2-(3-amino-3-carboxypropyl)histidine synthase (EC:2.5.1.108)
Diphthamide synthase subunit {ECO:0000313|EMBL:KHO51464.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein; K07561 diphthamide synthase subunit DPH2 id=5044025 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_01_scaffold_5050_13
unknown

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comp(15114..15377)
DNA (264bp) protein (88aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5050_14
AR11, Woesearchaeaota, DPANN, Archaea

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comp(15422..17215)
DNA (1794bp) protein (598aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000371BE7E
Putative uncharacterized protein Tax=AR11
rifcsphigho2_01_scaffold_5050_15
unknown

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comp(17202..17690)
DNA (489bp) protein (163aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5050_16

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comp(17708..18979)
DNA (1272bp) protein (424aa)
Peptidase S8/S53 id=4688818 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF63111.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_5050_17
GWF2_OD1_39_13, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

19037..19444
DNA (408bp) protein (136aa)
Tax=GWF2_OD1_39_13
rifcsphigho2_01_scaffold_5050_18
GWF2_TM6_38_10, TM6, Bacteria

Not on your lists

comp(19452..19622)
DNA (171bp) protein (57aa)
Tax=GWF2_TM6_38_10
rifcsphigho2_01_scaffold_5050_19
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(19624..20562)
DNA (939bp) protein (313aa)
Signal peptide peptidase SppA, 36K type n=1 Tax=Candidatus Haloredivivus sp. G17 RepID=H0AES0_9EURY id=5103042 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Protease IV Tax=AR11
Signal peptide peptidase SppA, 36K type
rifcsphigho2_01_scaffold_5050_20
AR17, Woesearchaeaota, DPANN, Archaea

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comp(20559..20759)
DNA (201bp) protein (67aa)
Tax=AR17
rifcsphigho2_01_scaffold_5050_21

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comp(20776..21285)
DNA (510bp) protein (170aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO52427.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
id=5046579 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_01_scaffold_5050_22
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

21465..21809
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000363D148
translation initiation factor IF-1; K03236 translation initiation factor 1A Tax=CG_Woesearch_02
Translation initiation factor 1A
rifcsphigho2_01_scaffold_5050_23
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

21857..22456
DNA (600bp) protein (200aa)
Tax=CG_Woesearch_02
rifcsphigho2_01_scaffold_5050_24
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22457..22903)
DNA (447bp) protein (149aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal pep
Lipoprotein signal peptidase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S2Z9_THEOJ
lipoprotein signal peptidase
rifcsphigho2_01_scaffold_5050_25
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(22950..23345)
DNA (396bp) protein (132aa)
Tax=CG_Woesearch_01
rifcsphigho2_01_scaffold_5050_26
unknown

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comp(23398..23562)
DNA (165bp) protein (55aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5050_27
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(23564..24262)
DNA (699bp) protein (233aa)
HhH-GPD family protein id=5800764 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
HhH-GPD family protein Tax=AR15
HhH-GPD family protein
rifcsphigho2_01_scaffold_5050_28
unknown

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24317..25282
DNA (966bp) protein (322aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5050_29
unknown

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comp(25287..25934)
DNA (648bp) protein (216aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5050_30
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(26003..26401)
DNA (399bp) protein (133aa)
30S ribosomal protein S8e n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BAE7_METIK
30S ribosomal protein S8; K02995 small subunit ribosomal protein S8e Tax=RBG_13_Woesearchaeota_36_6_curated
30S ribosomal protein S8
Displaying items 1-30 of 60 in total

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