ggKbase home page

rifcsphigho2_01_scaffold_4425

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_4425_1
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(3..329)
DNA (327bp) protein (109aa)
lrpC; Lpr family transcriptional regulator Tax=RBG_13_Pacearchaeota_36_9_curated
leucine-responsive regulatory protein 1; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein id=5043670 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
rifcsphigho2_01_scaffold_4425_2
unknown

Not on your lists

447..572
DNA (126bp) protein (42aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4425_3
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

627..1190
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B40BCB
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_01_scaffold_4425_4
unknown

Not on your lists

comp(1292..1705)
DNA (414bp) protein (138aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4425_5
unknown

Not on your lists

comp(1707..2120)
DNA (414bp) protein (138aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4425_6
unknown

Not on your lists

comp(2216..2650)
DNA (435bp) protein (145aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4425_7

Not on your lists

comp(2709..3047)
DNA (339bp) protein (113aa)
Peptidyl-tRNA hydrolase, PTH2 family {ECO:0000313|EMBL:KHO50116.1}; EC=3.1.1.29 {ECO:0000313|EMBL:KHO50116.1};; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase id=5799736 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_01_scaffold_4425_8

Not on your lists

3221..3436
DNA (216bp) protein (72aa)
50S ribosomal protein L37Ae n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LHQ8_THEBM id=5103031 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L37Ae
50S ribosomal protein L37Ae {ECO:0000256|HAMAP-Rule:MF_00327}; Ribosomal protein L43e {ECO:0000256|HAMAP-Rule:MF_00327}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_4425_9
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

3433..3570
DNA (138bp) protein (46aa)
hypothetical protein
id=5103032 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
rifcsphigho2_01_scaffold_4425_10
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

3574..3927
DNA (354bp) protein (118aa)
erpK protein; K04798 prefoldin beta subunit id=5050960 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
erpK protein; K04798 prefoldin beta subunit Tax=AR18
Prefoldin subunit beta
rifcsphigho2_01_scaffold_4425_11
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

3949..4194
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035F1392
hypothetical protein; K09721 hypothetical protein Tax=CG_Woesearch_03
hypothetical protein
rifcsphigho2_01_scaffold_4425_12

Not on your lists

4466..4867
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Candidatus Haloredivivus sp. G17 RepID=H0A9E6_9EURY id=5103035 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62316.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_4425_13
unknown

Not on your lists

4877..5059
DNA (183bp) protein (61aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4425_14
unknown

Not on your lists

5095..5559
DNA (465bp) protein (155aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4425_15
R_OD1_Wolfebacteria_45_10c, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(5573..7726)
DNA (2154bp) protein (718aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000375BB90
Surface layer protein B SlgB-2
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_OD1_Wolfebacteria_45_10c_curated
rifcsphigho2_01_scaffold_4425_16
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(7723..8238)
DNA (516bp) protein (172aa)
id=5047284 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
rifcsphigho2_01_scaffold_4425_17

Not on your lists

comp(8364..8993)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000382AFA5
Marine sediment metagenome DNA, contig: S01H1_S28060 {ECO:0000313|EMBL:GAG33101.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
Nitroreductase
rifcsphigho2_01_scaffold_4425_18
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

9023..10771
DNA (1749bp) protein (583aa)
hypothetical protein; K10747 DNA ligase 1 [EC:6.5.1.1] Tax=RBG_13_Woesearchaeota_36_6_curated
DNA ligase id=5800225 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ATP-dependent DNA ligase
rifcsphigho2_01_scaffold_4425_19
unknown

Not on your lists

10905..11723
DNA (819bp) protein (273aa)
NEQ098 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=Q74MK1_NANEQ id=5102985 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
NEQ098 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=Q74MK1_NANEQ Tax=AR20
hypothetical protein
rifcsphigho2_01_scaffold_4425_20

Not on your lists

comp(11720..12784)
DNA (1065bp) protein (355aa)
hypothetical protein id=5051038 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:AIF12592.1}; TaxID=1456203 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_56_D04.;"
MiaB-like tRNA modifying enzyme
rifcsphigho2_01_scaffold_4425_21
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(12777..13571)
DNA (795bp) protein (265aa)
thiamine biosynthesis ThiI-like protein; K03151 thiamine biosynthesis protein ThiI Tax=CG_Woesearch_02
thiamine biosynthesis/tRNA modification protein ThiI; K03151 thiamine biosynthesis protein ThiI id=5048296 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
thiI
rifcsphigho2_01_scaffold_4425_22
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(13733..14500)
DNA (768bp) protein (256aa)
Uncharacterized DNA primase small subunit-like protein AF_2298 n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=Y2298_ARCFU
Eukaryotic-type DNA primase, catalytic (small) subunit
Eukaryotic-type DNA primase, catalytic (Small) subunit {ECO:0000313|EMBL:AIG99307.1}; TaxID=1344584 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" s
rifcsphigho2_01_scaffold_4425_23
Asaia platycodi, Asaia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14583..14888
DNA (306bp) protein (102aa)
Thioredoxin n=1 Tax=Asaia sp. SF2.1 RepID=V8A698_9PROT
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1382230 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Asaia.;" source="Asaia platycodi SF2.1.;"
thioredoxin
rifcsphigho2_01_scaffold_4425_24
unknown

Not on your lists

comp(14949..15515)
DNA (567bp) protein (189aa)

This feature has no annotations

rifcsphigho2_01_scaffold_4425_25
CG_Elusi_04, Elusimicrobia, Bacteria

Not on your lists

comp(15552..18071)
DNA (2520bp) protein (840aa)
ribonucleoside-diphosphate reductase (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] Tax=CG_Elusi_04
nrdA; ribonucleoside-diphosphate reductase alpha chain (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase id=5027120 bin=GWA2_Elusi-like_A8_64_40 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusi-like_A8_64_40 organism_group=Elusimicrobia
rifcsphigho2_01_scaffold_4425_26
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(18081..18407)
DNA (327bp) protein (109aa)
Transcriptional repressor NrdR n=1 Tax=Dialister sp. CAG:357 RepID=R7CSK5_9FIRM
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR Tax=RBG_13_Pacearchaeota_33_26_curated
Ribonucleotide reductase transcriptional regulator NrdR
rifcsphigho2_01_scaffold_4425_27
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(18693..20462)
DNA (1770bp) protein (590aa)
RNase L inhibitor; K06174 ATP-binding cassette, sub-family E, member 1 id=5048286 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
RNase L inhibitor; K06174 ATP-binding cassette, sub-family E, member 1 Tax=AR18
RNase L inhibitor
rifcsphigho2_01_scaffold_4425_28
unknown

Not on your lists

comp(20719..22344)
DNA (1626bp) protein (542aa)

This feature has no annotations

Displaying 28 items

View Taxonomy