ggKbase home page

rifcsphigho2_01_scaffold_5258

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_5258_1
unknown

Not on your lists

1..333
DNA (333bp) protein (111aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5258_2
Actinomyces johnsonii, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(304..714)
DNA (411bp) protein (137aa)
Radical SAM domain protein n=1 Tax=Actinomyces johnsonii F0510 RepID=U1PYX5_9ACTO
Radical SAM domain protein {ECO:0000313|EMBL:ERH15601.1}; TaxID=1227262 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces johnsonii F0510.;"
hypothetical protein
rifcsphigho2_01_scaffold_5258_3
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

Not on your lists

comp(749..1297)
DNA (549bp) protein (183aa)
Molybdopterin cofactor synthesis protein MoaA id=4434733 bin=GWC2_Deltaproteobacteria_55_46 species=Azospirillum amazonense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
putative cofactor modifying protein Tax=RBG_13_Aminicenantes_63_10_curated
hypothetical protein
rifcsphigho2_01_scaffold_5258_4
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(1287..1841)
DNA (555bp) protein (185aa)
hypothetical protein id=5051057 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein Tax=AR18
Methyltransferase type 11
rifcsphigho2_01_scaffold_5258_5
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

1906..2877
DNA (972bp) protein (324aa)
group 1 glycosyl transferase id=5045311 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
group 1 glycosyl transferase Tax=AR18
glycosyl transferase family protein
rifcsphigho2_01_scaffold_5258_6

Not on your lists

2927..4384
DNA (1458bp) protein (486aa)
Fe-S oxidoreductase (EC:4.-.-.-)
radical SAM family Fe-S protein id=5045309 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Radical SAM family Fe-S protein {ECO:0000313|EMBL:KHO54516.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
rifcsphigho2_01_scaffold_5258_7

Not on your lists

comp(4364..5554)
DNA (1191bp) protein (397aa)
glycoside hydrolase
glycoside hydrolase id=5241087 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Glycoside hydrolase {ECO:0000313|EMBL:AJF60078.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_5258_8
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5551..6246)
DNA (696bp) protein (232aa)
Glycosyltransferase group 2 family protein n=1 Tax=Clostridium sp. CAG:557 RepID=R6GFB8_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEA12804.1}; TaxID=2162 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacteriu
rifcsphigho2_01_scaffold_5258_9
RIFOXYC2_FULL_RIF01_39_67_curated, RIF1, Bacteria

Not on your lists

6303..7409
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000364806A
ADP-heptose--LPS heptosyltransferase Tax=RIFOXYC2_FULL_RIF01_39_67_curated
lipopolysaccharide heptosyltransferase III
rifcsphigho2_01_scaffold_5258_10
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

7406..8533
DNA (1128bp) protein (376aa)
group 1 glycosyl transferase id=5048333 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
group 1 glycosyl transferase Tax=AR18
Glycosyl transferase, group 1
rifcsphigho2_01_scaffold_5258_11
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8521..9378
DNA (858bp) protein (286aa)
Glycosyl transferase family 2 n=1 Tax=uncultured bacterium RepID=K1YKM1_9BACT
Glycosyltransferase group 2 family domain protein {ECO:0000313|EMBL:GAN34982.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candi
family 2 glycosyl transferase
rifcsphigho2_01_scaffold_5258_12
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

9381..10811
DNA (1431bp) protein (477aa)
Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase elongator protein n=1 Tax=uncultured bacterium RepID=K1XZY5_9BACT
Fe-S oxidoreductase {ECO:0000313|EMBL:GAN34981.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Cand
methyltransferase
rifcsphigho2_01_scaffold_5258_13
R_WWE3_35_17, WWE3, Bacteria

Not on your lists

comp(10859..12349)
DNA (1491bp) protein (497aa)
Uncharacterized methyltransferase PH0819 n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=Y819_PYRHO
methyltransferase Tax=RIFCSPHIGHO2_01_FULL_WWE3_35_17_curated
methyltransferase
rifcsphigho2_01_scaffold_5258_14
unknown

Not on your lists

comp(12288..12587)
DNA (300bp) protein (100aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5258_15

Not on your lists

comp(12743..13663)
DNA (921bp) protein (307aa)
NADH dehydrogenase-like protein id=5044469 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
NADH dehydrogenase-like protein {ECO:0000313|EMBL:KHO48405.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
NAD-dependent epimerase/dehydratase
rifcsphigho2_01_scaffold_5258_16

Not on your lists

13801..14418
DNA (618bp) protein (206aa)
hypothetical protein
id=5103725 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:AJF63003.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_5258_17
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(14452..15993)
DNA (1542bp) protein (514aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000370D88B
hypothetical protein
Tax=AR17
rifcsphigho2_01_scaffold_5258_18
GWF1_Spirochaetes_41_5_curated, Spirochaetes, Bacteria

Not on your lists

16069..16911
DNA (843bp) protein (281aa)
hypothetical protein Tax=GWF1_Spirochaetes_41_5_curated
rifcsphigho2_01_scaffold_5258_19
unknown

Not on your lists

16887..18593
DNA (1707bp) protein (569aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000366A16E
rifcsphigho2_01_scaffold_5258_20
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

18590..19255
DNA (666bp) protein (222aa)
glycosyl transferase Tax=CG_Woesearch_02
family 2 glycosyl transferase id=5044216 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_01_scaffold_5258_21
RBG_13_OP11_Woesebacteria_46_13_curated, Woesebacteria, Microgenomates, Bacteria

Not on your lists

19252..19590
DNA (339bp) protein (113aa)
hypothetical protein; K09153 hypothetical protein Tax=RBG_13_OP11_Woesebacteria_46_13_curated
rifcsphigho2_01_scaffold_5258_22
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

19587..20516
DNA (930bp) protein (310aa)
UDP-glucuronate decarboxylase (EC:4.1.1.35)
udp-glucose 4-epimerase id=5096637 bin=PER_GWF2_39_17 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=PER_GWF2_39_17 organism_group=PER (Peregrinibacteria)
udp-glucose 4-epimerase Tax=PER_GWF2_39_17
rifcsphigho2_01_scaffold_5258_23

Not on your lists

20513..21328
DNA (816bp) protein (272aa)
Carbamoyl transferase n=1 Tax=Alishewanella agri BL06 RepID=I8UED4_9ALTE id=5103359 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Carbamoyl transferase
Carbamoyl transferase {ECO:0000313|EMBL:AJF62640.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_5258_24
Thermococcus sibiricus, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

21345..22100
DNA (756bp) protein (252aa)
Carbamoyl transferase, NodU family n=1 Tax=Thermococcus sibiricus (strain MM 739 / DSM 12597) RepID=C6A2J1_THESM
Carbamoyl transferase, NodU family
Carbamoyl transferase, NodU family {ECO:0000313|EMBL:ACS89836.1}; TaxID=604354 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus sibir
rifcsphigho2_01_scaffold_5258_25
Methanosarcina sp. 1.H.A.2.2, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

22084..22956
DNA (873bp) protein (291aa)
Polysaccharide deacetylase n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1QA40_METMZ
polysaccharide deacetylase, putative
Polysaccharide deacetylase {ECO:0000313|EMBL:KKH48328.1}; TaxID=1483601 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcin
rifcsphigho2_01_scaffold_5258_26

Not on your lists

22925..24415
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Thermococcus sp. (strain CGMCC 1.5172 / 4557) PF0_THES4">RepID=G0HPF0_THES4 id=5103417 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62698.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_5258_27
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(24412..25806)
DNA (1395bp) protein (465aa)
methyltransferase Tax=AR17
Radical SAM domain protein id=3471090 bin=GWA2_Elusimicrobia_56_46 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
Fe-S oxidoreductase
rifcsphigho2_01_scaffold_5258_28
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(25803..27296)
DNA (1494bp) protein (498aa)
radical SAM protein Tax=RBG_13_Pacearchaeota_33_26_curated
Fe-S oxidoreductase id=4511050 bin=GWC2_Deltaproteobacteria_42_51 species=RAAC2_WWE3 genus=RAAC2_WWE3 taxon_order=RAAC2_WWE3 taxon_class=RAAC2_WWE3 phylum=WWE3 tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
rifcsphigho2_01_scaffold_5258_29
unknown

Not on your lists

27373..27885
DNA (513bp) protein (171aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5258_30
unknown

Not on your lists

comp(27886..28836)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Geobacter sp. (strain FRC-32) RepID=B9M539_GEOSF id=5103419 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein n=1 Tax=Geobacter sp. (strain FRC-32) RepID=B9M539_GEOSF Tax=AR20
hypothetical protein
Displaying items 1-30 of 50 in total

View Taxonomy