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rifcsphigho2_01_scaffold_14342

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_14342_1
Setaria italica, Setaria, Poales, commelinids, Streptophyta, Viridiplantae

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167..1984
DNA (1818bp) protein (606aa)
Uncharacterized protein n=2 Tax=Panicoideae RepID=K3XFR6_SETIT
Uncharacterized protein {ECO:0000313|EnsemblPlants:Si000735m}; TaxID=4555 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
ATP-citrate lyase subunit A
rifcsphigho2_01_scaffold_14342_2
CG_Woesearch_02, Woesearchaeota, Archaea

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2202..4928
DNA (2727bp) protein (909aa)
oligosaccharyl transferase STT3 subunit; K07151 dolichyl-diphosphooligosaccharide--protein glycosyltransferase [EC:2.4.1.119] Tax=CG_Woesearch_02
Oligosaccharyl transferase STT3 subunit; K07151 dolichyl-diphosphooligosaccharide--protein glycosyltransferase [EC:2.4.1.119] id=5041745 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
oligosaccharyl transferase STT3 subunit
rifcsphigho2_01_scaffold_14342_3
CG_Woesearch_02, Woesearchaeota, Archaea

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4967..5617
DNA (651bp) protein (217aa)
glycosyl transferase Tax=CG_Woesearch_02
family 2 glycosyl transferase id=5045944 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
glycosyl transferase
rifcsphigho2_01_scaffold_14342_4
R_OP11_Gottesmanbacteria_46_14, Gottesmanbacteria, Microgenomates, Bacteria

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5611..5952
DNA (342bp) protein (114aa)
hypothetical protein; K09153 hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Gottesmanbacteria_46_14_curated
hypothetical protein; K09153 hypothetical protein id=5045943 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_01_scaffold_14342_5
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

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5949..7136
DNA (1188bp) protein (396aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
Glycosyl transferase group 1 id=3643107 bin=GWC2_Deltaproteobacteria_42_51 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
group 1 glycosyl transferase
rifcsphigho2_01_scaffold_14342_6
AR15, Woesearchaeaota, DPANN, Archaea

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7172..8464
DNA (1293bp) protein (431aa)
Glycosyltransferase id=5800149 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Glycosyltransferase Tax=AR15
hexosyltransferase
rifcsphigho2_01_scaffold_14342_7
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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8502..9833
DNA (1332bp) protein (444aa)
Phosphoenolpyruvate phosphomutase n=4 Tax=Pelosinus fermentans RepID=I8SLN6_9FIRM
Phosphoenolpyruvate phosphomutase {ECO:0000313|EMBL:EIW20927.1}; TaxID=1149862 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans
phosphoenolpyruvate phosphomutase
rifcsphigho2_01_scaffold_14342_8
GWF2_OD1_43_32, Falkowbacteria, Parcubacteria, Bacteria

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9901..11040
DNA (1140bp) protein (380aa)
Iron-containing alcohol dehydrogenase n=1 Tax=Halanaerobium hydrogeniformans RepID=E4RNK6_HALHG
Iron-containing alcohol dehydrogenase Tax=GWF2_OD1_43_32
iron-containing alcohol dehydrogenase
rifcsphigho2_01_scaffold_14342_9
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_52_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11084..11548)
DNA (465bp) protein (155aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_52_10_curated
Radical SAM domain protein id=3541317 bin=GWA1_Kazan_50_15 species=Methanoplanus limicola genus=Methanoplanus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA1_Kazan_50_15 organism_group=Kazan organism_desc=Probably Kazan: candidate for curation
Radical SAM
rifcsphigho2_01_scaffold_14342_10
R_Planctomycetes_50_16, Planctomycetes, Bacteria

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comp(11545..11940)
DNA (396bp) protein (132aa)
conserved protein of unknown function[Include Cobalamin (vitamin B12)-binding domain and Radical SAM domain]
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Planctomycetes_50_16_curated
Radical SAM domain protein id=4884116 bin=GWC2_Methylomirabilis_70_24 species=Methanoplanus limicola genus=Methanoplanus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rifcsphigho2_01_scaffold_14342_11
RHI_Planctomycetes_52_36, Planctomycetes, Bacteria

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comp(11933..12502)
DNA (570bp) protein (190aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Planctomycetes_52_36_curated
Radical SAM domain protein id=2171077 bin=GWB2_Nitrospirae_rel_47_37 species=Methanoplanus limicola genus=Methanoplanus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
rifcsphigho2_01_scaffold_14342_12
unknown

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comp(12690..12788)
DNA (99bp) protein (33aa)

This feature has no annotations

Displaying 12 items

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