ggKbase home page

rifcsphigho2_01_scaffold_9723

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_9723_1
Thermofilum pendens, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

1..954
DNA (954bp) protein (318aa)
tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosy
tRNA sulfurtransferase n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RWZ9_THEPD
thiamine biosynthesis protein ThiI
rifcsphigho2_01_scaffold_9723_2
unknown

Not on your lists

954..1826
DNA (873bp) protein (291aa)

This feature has no annotations

rifcsphigho2_01_scaffold_9723_3
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

1876..2334
DNA (459bp) protein (153aa)
hypothetical protein
Uncharacterized protein Tax=CG_Pacearch_02
id=5103513 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsphigho2_01_scaffold_9723_4
CG_Elusi_02, Elusimicrobia, Bacteria

Not on your lists

2752..4038
DNA (1287bp) protein (429aa)
ATPase; K07133 Tax=CG_Elusi_02
ATPase id=4679875 bin=GWC2_Elusimicrobia_51_8 species=Candidatus Korarchaeum cryptofilum genus=Candidatus Korarchaeum taxon_order=unknown taxon_class=unknown phylum=Korarchaeota tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
ATPase
rifcsphigho2_01_scaffold_9723_5

Not on your lists

comp(4174..4530)
DNA (357bp) protein (119aa)
Putative uncharacterized protein id=2823230 bin=GWC1_KAZAN_52_13 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC1_KAZAN_52_13 organism_group=Kazan
Uncharacterized protein {ECO:0000313|EMBL:KKW24916.1}; TaxID=1620413 species="Bacteria.;" source="bacterium GW2011_GWC1_52_13.;"
hypothetical protein
rifcsphigho2_01_scaffold_9723_6
unknown

Not on your lists

4618..6138
DNA (1521bp) protein (507aa)

This feature has no annotations

rifcsphigho2_01_scaffold_9723_7
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(6171..7373)
DNA (1203bp) protein (401aa)
methionine synthase (B12-independent); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] id=14631529 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
methionine synthase (B12-independent); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] Tax=CSP1_3_Armatimonadetes
methionine synthase (B12-independent) (EC:2.1.1.14)
rifcsphigho2_01_scaffold_9723_8
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(7366..8349)
DNA (984bp) protein (328aa)
methylcobalamin:homocysteine methyltransferase (EC:2.1.1.-)
cobalamin-independent synthase MetE Tax=RBG_16_Archaea_50_20_curated
cobalamin-independent synthase MetE-like protein id=14631530 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
rifcsphigho2_01_scaffold_9723_9
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(8401..8829)
DNA (429bp) protein (143aa)
FAD synthase n=1 Tax=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) RepID=RIBL_THEVO
cytidylyltransferase; K14656 FAD synthetase Tax=AR9
cytidylyltransferase
rifcsphigho2_01_scaffold_9723_10

Not on your lists

comp(8826..10970)
DNA (2145bp) protein (715aa)
ATP-binding protein {ECO:0000313|EMBL:KHO49681.1}; EC=6.3.5.4 {ECO:0000313|EMBL:KHO49681.1};; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
ATP-binding protein (EC:6.3.5.4) id=5048680 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ATP binding protein
rifcsphigho2_01_scaffold_9723_11
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

11071..12177
DNA (1107bp) protein (369aa)
peptide chain release factor 1; K03265 peptide chain release factor subunit 1 Tax=CG_Woesearch_02
peptide chain release factor subunit 1; K03265 peptide chain release factor subunit 1 id=5045856 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
eukaryotic peptide chain release factor subunit 1
rifcsphigho2_01_scaffold_9723_12
unknown

Not on your lists

comp(12174..12623)
DNA (450bp) protein (150aa)

This feature has no annotations

rifcsphigho2_01_scaffold_9723_13
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

12724..13401
DNA (678bp) protein (226aa)
hypothetical protein Tax=CG_Woesearch_02
Domain of unknown function SprT-like id=5800375 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_01_scaffold_9723_14
Thermococcus nautili, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

13470..13682
DNA (213bp) protein (71aa)
Archaeal histone B n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=HARB_THEKO
histone B
Histones H3 and H4 {ECO:0000313|EMBL:AHL23243.1}; TaxID=195522 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus nautili.;"
rifcsphigho2_01_scaffold_9723_15

Not on your lists


13706..14098
DNA (393bp) protein (131aa)
Translation initiation factor 5A id=5800376 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Translation initiation factor 5A {ECO:0000256|HAMAP-Rule:MF_00085, ECO:0000256|SAAS:SAAS00016433}; Hypusine-containing protein {ECO:0000256|HAMAP-Rule:MF_00085}; eIF-5A {ECO:0000256|HAMAP-Rule:MF_0008
Translation initiation factor 5A
rifcsphigho2_01_scaffold_9723_16
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

14166..14327
DNA (162bp) protein (54aa)
hypothetical protein
id=5800377 Tax=CG_Woesearch_02
id=5800377 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_01_scaffold_9723_17
unknown

Not on your lists

14531..14626
DNA (96bp) protein (32aa)

This feature has no annotations

Displaying 17 items

View Taxonomy