ggKbase home page

rifcsplowo2_01_scaffold_7146

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_7146_1

Not on your lists

45..512
DNA (468bp) protein (156aa)
AsnC family transcriptional regulator id=5045866 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
AsnC family transcriptional regulator {ECO:0000313|EMBL:KHO46479.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Transcription regulator, Lrp/AsnC family
rifcsplowo2_01_scaffold_7146_2
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists

comp(568..1365)
DNA (798bp) protein (266aa)
Transposase IS4 family protein n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GVM8_9EURY
transposase family protein Tax=CG_Pacearch_01
rifcsplowo2_01_scaffold_7146_3
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1595..2542
DNA (948bp) protein (316aa)
family 2 glycosyl transferase Tax=RBG_13_Deltaproteobacteria_61_14_curated
family 2 glycosyl transferase
family 2 glycosyl transferase id=5241091 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_7146_4
Desulfobulbus propionicus, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2539..3726
DNA (1188bp) protein (396aa)
Glycosyl transferase group 1 n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RFS4_DESPD rbh
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ADW18235.1}; TaxID=577650 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobu
rifcsplowo2_01_scaffold_7146_5

Not on your lists

3723..4379
DNA (657bp) protein (219aa)
Putative glycosyltransferase n=1 Tax=Bacillus methanolicus PB1 RepID=I3E4B1_BACMT id=5087346 bin=GWF1_OP11_31_35_complete species=Bacillus methanolicus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF1_OP11_31_35_complete organism_group=OP11 (Microgenomates) organism_desc=Complete genome (was OP11_1)
Marine sediment metagenome DNA, contig: S01H1_S19214 {ECO:0000313|EMBL:GAG17189.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsplowo2_01_scaffold_7146_6
GWA2_OD1_38_13, Parcubacteria, Bacteria

Not on your lists

4376..5986
DNA (1611bp) protein (537aa)
hypothetical protein Tax=GWA2_OD1_38_13
transmembrane_regions 13..32 id=120216 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
rifcsplowo2_01_scaffold_7146_7
RBG_16_OP11_Levybacteria_35_11_curated, Levybacteria, Microgenomates, Bacteria

Not on your lists

5970..6899
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037B5F12
hypothetical protein; K07027 Tax=RBG_16_OP11_Levybacteria_35_11_curated
hypothetical protein
rifcsplowo2_01_scaffold_7146_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6892..8451
DNA (1560bp) protein (520aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KCZ70620.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;"
transmembrane_regions id=5802851 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
rifcsplowo2_01_scaffold_7146_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8441..10051
DNA (1611bp) protein (537aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ70617.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;"
transmembrane_regions 7..26 id=120219 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
rifcsplowo2_01_scaffold_7146_10
AR13, Pacearchaeaota, DPANN, Archaea

Not on your lists

10048..10431
DNA (384bp) protein (128aa)
hypothetical protein Tax=AR13
rifcsplowo2_01_scaffold_7146_11
AR13, Pacearchaeaota, DPANN, Archaea

Not on your lists

10418..10846
DNA (429bp) protein (143aa)
membrane protein
hypothetical protein Tax=AR13
seg id=5090742 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
rifcsplowo2_01_scaffold_7146_12
unknown

Not on your lists

10946..12340
DNA (1395bp) protein (465aa)

This feature has no annotations

rifcsplowo2_01_scaffold_7146_13
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

12396..12599
DNA (204bp) protein (68aa)
Putative uncharacterized protein Tax=CG_Pacearch_02
rifcsplowo2_01_scaffold_7146_14
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

12596..12856
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JC18_9ARCH
hypothetical protein Tax=CG_Pacearch_02
RelE/StbE family addiction module toxin
rifcsplowo2_01_scaffold_7146_15
unknown

Not on your lists

13040..14125
DNA (1086bp) protein (362aa)

This feature has no annotations

rifcsplowo2_01_scaffold_7146_16

Not on your lists

14609..14824
DNA (216bp) protein (72aa)
DNA/RNA-binding protein Alba n=2 Tax=Methanotorris RepID=F6BCD3_METIK id=5103050 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA/RNA-binding protein Alba
DNA/RNA-binding protein Alba {ECO:0000313|EMBL:AJF62331.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_7146_17
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

14934..16595
DNA (1662bp) protein (554aa)
Transporter, CPA2 family n=4 Tax=Methanococcus maripaludis RepID=A4FZ11_METM5 id=5103049 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
sodium/hydrogen exchanger Tax=AR17
Transporter, CPA2 family
Displaying 17 items

View Taxonomy