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rifcsphigho2_02_scaffold_981

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_981_1
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1..255)
DNA (255bp) protein (85aa)
Transposase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TKP7_METAC
transposase
Transposase {ECO:0000313|EMBL:AAM06721.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina acetivorans (s
rifcsphigho2_02_scaffold_981_2
CG_Woesearch_02, Woesearchaeota, Archaea

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560..1411
DNA (852bp) protein (284aa)
hypothetical protein
hypothetical protein Tax=CG_Woesearch_02
Uncharacterized membrane protein id=5041824 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_981_3
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(1403..2098)
DNA (696bp) protein (232aa)
Putative uncharacterized protein Tax=RBG_13_Woesearchaeota_36_6_curated
Putative uncharacterized protein id=5046316 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_981_4

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comp(2358..4373)
DNA (2016bp) protein (672aa)
mcm; DNA replication initiator protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] id=5046315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA replication initiator protein, replicative DNA helicase Mcm {ECO:0000313|EMBL:KHO46116.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO46116.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.
DNA replication initiator Cdc21/Cdc54
rifcsphigho2_02_scaffold_981_5

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comp(4449..5000)
DNA (552bp) protein (184aa)
tbpE; transcription factor; K03120 transcription initiation factor TFIID TATA-box-binding protein id=5046314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rul
TATA-box-binding protein
rifcsphigho2_02_scaffold_981_6

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5130..5831
DNA (702bp) protein (234aa)
Ribonuclease P/MRP protein subunit RPP1 {ECO:0000313|EMBL:KHO50749.1}; EC=3.1.26.5 {ECO:0000313|EMBL:KHO50749.1};; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
RNase P subunit p30 id=5041841 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_981_7
RIFOXYC2_FULL_RIF01_39_67_curated, RIF1, Bacteria

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5873..8008
DNA (2136bp) protein (712aa)
Tax=RIFOXYC2_FULL_RIF01_39_67_curated
rifcsphigho2_02_scaffold_981_8
RIFOXYC2_FULL_RIF01_39_67_curated, RIF1, Bacteria

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8005..9261
DNA (1257bp) protein (419aa)
seg Tax=RIFOXYC2_FULL_RIF01_39_67_curated
seg id=5041845 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_981_9
unknown

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9620..10546
DNA (927bp) protein (309aa)

This feature has no annotations

rifcsphigho2_02_scaffold_981_10
RIFOXYC2_FULL_RIF01_39_67_curated, RIF1, Bacteria

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10617..12119
DNA (1503bp) protein (501aa)
Tax=RIFOXYC2_FULL_RIF01_39_67_curated
rifcsphigho2_02_scaffold_981_11

Not on your lists

12141..17411
DNA (5271bp) protein (1757aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO49224.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein id=5041855 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_981_12
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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17408..17905
DNA (498bp) protein (166aa)
id=5046787 Tax=RBG_13_Woesearchaeota_36_6_curated
id=5046787 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_981_13
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

17930..18925
DNA (996bp) protein (332aa)
hypothetical protein
transmembrane_regions Tax=CG_Woesearch_02
transmembrane_regions id=5041857 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_981_14
CG_Woesearch_02, Woesearchaeota, Archaea

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18955..19437
DNA (483bp) protein (161aa)
id=5046785 Tax=CG_Woesearch_02
id=5046785 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_981_15

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19427..19915
DNA (489bp) protein (163aa)
id=5046784 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45972.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_02_scaffold_981_16

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20143..20442
DNA (300bp) protein (100aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50773.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
id=5046782 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_981_17
unknown

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20496..20633
DNA (138bp) protein (46aa)

This feature has no annotations

rifcsphigho2_02_scaffold_981_18
unknown

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20614..21807
DNA (1194bp) protein (398aa)

This feature has no annotations

rifcsphigho2_02_scaffold_981_19
unknown

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21809..21958
DNA (150bp) protein (50aa)

This feature has no annotations

rifcsphigho2_02_scaffold_981_20
unknown

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21959..22666
DNA (708bp) protein (236aa)

This feature has no annotations

rifcsphigho2_02_scaffold_981_21
unknown

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22668..22967
DNA (300bp) protein (100aa)

This feature has no annotations

rifcsphigho2_02_scaffold_981_22
unknown

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22910..24031
DNA (1122bp) protein (374aa)

This feature has no annotations

rifcsphigho2_02_scaffold_981_23
unknown

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24293..24706
DNA (414bp) protein (138aa)

This feature has no annotations

rifcsphigho2_02_scaffold_981_24
unknown

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24681..25160
DNA (480bp) protein (160aa)

This feature has no annotations

rifcsphigho2_02_scaffold_981_25
unknown

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25147..25656
DNA (510bp) protein (170aa)

This feature has no annotations

rifcsphigho2_02_scaffold_981_26
unknown

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25653..27941
DNA (2289bp) protein (763aa)

This feature has no annotations

rifcsphigho2_02_scaffold_981_27

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28162..29109
DNA (948bp) protein (316aa)
OB-fold tRNA/helicase-type nucleic acid binding protein; K07466 replication factor A1 id=5046768 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Replication factor A1 {ECO:0000313|EMBL:KHO45956.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Nucleic acid binding OB-fold tRNA/helicase-type
rifcsphigho2_02_scaffold_981_28
unknown

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comp(29084..29512)
DNA (429bp) protein (143aa)

This feature has no annotations

rifcsphigho2_02_scaffold_981_29
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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29842..30126
DNA (285bp) protein (95aa)
hypothetical protein
id=5046763 Tax=RBG_13_Woesearchaeota_36_6_curated
id=5046763 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_981_30

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30195..31259
DNA (1065bp) protein (355aa)
DNA repair and recombination protein RadA {ECO:0000256|HAMAP-Rule:MF_00348}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
DNA repair and recombination protein RadA; K04483 DNA repair protein RadA id=5046762 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA repair and recombination protein RadA
Displaying items 1-30 of 44 in total

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