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rifcsphigho2_02_scaffold_5540

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_5540_1
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..407
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DE3EAB
Uncharacterized protein {ECO:0000313|EMBL:KAJ02336.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter med
hypothetical protein
rifcsphigho2_02_scaffold_5540_2
unknown

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1053..1379
DNA (327bp) protein (109aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5540_3
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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1379..2734
DNA (1356bp) protein (452aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=RBG_16_Micrarchaeota_49_10_curated
cysS; Cysteine-tRNA ligase (EC:6.1.1.16)
Cysteinyl-tRNA ligase id=3544258 bin=GWA1_ZB2_49_26 species=unknown genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
rifcsphigho2_02_scaffold_5540_4
unknown

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2803..3204
DNA (402bp) protein (134aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5540_5
AR10, Diapherotrites, DPANN, Archaea

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3266..4012
DNA (747bp) protein (249aa)
hypothetical protein
hypothetical protein id=5240990 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
hypothetical protein Tax=AR10
rifcsphigho2_02_scaffold_5540_6
unknown

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comp(4020..5246)
DNA (1227bp) protein (409aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5540_7

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comp(5304..7718)
DNA (2415bp) protein (805aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=5048462 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02005}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02005};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02005}; TaxID=1579365 species="Archaea.;" source=
Valine-tRNA ligase
rifcsphigho2_02_scaffold_5540_8
AR11, Woesearchaeaota, DPANN, Archaea

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8192..9400
DNA (1209bp) protein (403aa)
Replication factor C large subunit Tax=AR11
replication factor C large subunit; K04800 replication factor C large subunit id=5047300 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
replication factor C large subunit
rifcsphigho2_02_scaffold_5540_9
unknown

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9557..10444
DNA (888bp) protein (296aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5540_10

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10680..12959
DNA (2280bp) protein (760aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FTX3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE21214.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
rifcsphigho2_02_scaffold_5540_11
CG_CPR10_02, CG_CPR10, Bacteria

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13117..15003
DNA (1887bp) protein (629aa)
Cartilage oligomeric matrix protein n=1 Tax=Alcanivorax hongdengensis A-11-3 RepID=L0WE11_9GAMM
cartilage oligomeric matrix protein
thrombospondin-2-like; K04659 thrombospondin Tax=CG_CPR10_02
rifcsphigho2_02_scaffold_5540_12

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15507..17030
DNA (1524bp) protein (508aa)
Glycyl-tRNA synthetase (EC:6.1.1.14)
Glycyl-tRNA synthetase id=5799897 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Glycyl-tRNA synthetase {ECO:0000313|EMBL:AJF61228.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
rifcsphigho2_02_scaffold_5540_13

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17073..17525
DNA (453bp) protein (151aa)
single-stranded DNA-binding replication protein A, large (70 kD) subunit; K07466 replication factor A1 id=5048480 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Replication factor A1 {ECO:0000313|EMBL:KHO45514.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
replication factor A1
rifcsphigho2_02_scaffold_5540_14
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(17650..18576)
DNA (927bp) protein (309aa)
Integrase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TTS4_METAC
integrase
Integrase {ECO:0000313|EMBL:AAM03804.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina acetivorans (str
rifcsphigho2_02_scaffold_5540_15

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comp(19051..21123)
DNA (2073bp) protein (691aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO52160.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein id=5048098 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_5540_16

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comp(21347..23641)
DNA (2295bp) protein (765aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO52161.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein id=5043756 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_5540_17

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comp(23646..23789)
DNA (144bp) protein (48aa)
Marine sediment metagenome DNA, contig: S01H1_S33064 {ECO:0000313|EMBL:GAG30110.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsphigho2_02_scaffold_5540_18

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24257..24490
DNA (234bp) protein (78aa)
Marine sediment metagenome DNA, contig: S01H1_S00172 {ECO:0000313|EMBL:GAF98317.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Putative uncharacterized protein id=3087969 bin=GWA2_OP3_53_43 species=uncultured microorganism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
rifcsphigho2_02_scaffold_5540_19
CG_Arma_01, Armatimonadetes, Bacteria

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comp(24587..24739)
DNA (153bp) protein (51aa)
CoA-binding protein; K06929 Tax=CG_Arma_01
Displaying 19 items

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