ggKbase home page

rifcsphigho2_02_scaffold_24277

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_24277_1
GWB2_OD1_ACD81_rel_46_69, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(3..302)
DNA (300bp) protein (100aa)
rhodanese-like protein id=15190470 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
Putative rhodanese-like protein {ECO:0000313|EMBL:KKU42301.1}; TaxID=1619009 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWB2_46_69.;"
hypothetical protein
rifcsphigho2_02_scaffold_24277_2
R_RIF_OD1_12_45_13b, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(372..893)
DNA (522bp) protein (174aa)
peroxiredoxin in rubredoxin operon (EC:1.11.1.15) Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_12_45_13b_curated
Strongly similar to peroxiredoxin (Thioredoxin peroxidase) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM6_9BACT
alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen
rifcsphigho2_02_scaffold_24277_3
Bacillus methanolicus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1205..1561
DNA (357bp) protein (119aa)
HxlR family transcriptional regulator n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EN27_CLOPA
transcriptional regulator, HxlR family
MarR family transcriptional regulator {ECO:0000313|EMBL:AIE61141.1}; TaxID=796606 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus methanolicus MGA3.;"
rifcsphigho2_02_scaffold_24277_4
unknown

Not on your lists

comp(1752..2066)
DNA (315bp) protein (105aa)

This feature has no annotations

rifcsphigho2_02_scaffold_24277_5
unknown

Not on your lists

comp(2011..2274)
DNA (264bp) protein (88aa)

This feature has no annotations

rifcsphigho2_02_scaffold_24277_6
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2411..3049)
DNA (639bp) protein (213aa)
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=2162 species="Ar
Endonuclease III n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYM9_METFV
rifcsphigho2_02_scaffold_24277_7
unknown

Not on your lists

3131..3835
DNA (705bp) protein (235aa)

This feature has no annotations

rifcsphigho2_02_scaffold_24277_8

Not on your lists

comp(4354..4749)
DNA (396bp) protein (132aa)
deoxyribonuclease/rho motif-related TRAM id=5241628 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
deoxyribonuclease/rho motif-related TRAM
Deoxyribonuclease/rho motif-related TRAM {ECO:0000313|EMBL:AJF60619.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_24277_9
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(4857..5012)
DNA (156bp) protein (52aa)
hypothetical protein
id=5241627 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
rifcsphigho2_02_scaffold_24277_10
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

5132..5377
DNA (246bp) protein (82aa)
hypothetical protein
transmembrane_regions id=5241564 bin=GW2011_AR10_complete species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
transmembrane_regions Tax=AR10
rifcsphigho2_02_scaffold_24277_11
unknown

Not on your lists

comp(5399..5977)
DNA (579bp) protein (193aa)

This feature has no annotations

rifcsphigho2_02_scaffold_24277_12

Not on your lists

comp(6066..6290)
DNA (225bp) protein (75aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO54293.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
rifcsphigho2_02_scaffold_24277_13
unknown

Not on your lists

comp(6415..6864)
DNA (450bp) protein (150aa)

This feature has no annotations

rifcsphigho2_02_scaffold_24277_14
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

7001..7345
DNA (345bp) protein (115aa)
integrase/recombinase xerd, integrase/recombinase XerD
xerD-like; integrase/recombinase xerd; K04763 integrase/recombinase XerD id=5241566 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
xerD-like; integrase/recombinase xerd; K04763 integrase/recombinase XerD Tax=AR10
Displaying 14 items

View Taxonomy