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rifcsphigho2_02_scaffold_1140

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_1140_1
unknown

Not on your lists

comp(1..585)
DNA (585bp) protein (195aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1140_2
unknown

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664..2952
DNA (2289bp) protein (763aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1140_3

Not on your lists

comp(2949..3794)
DNA (846bp) protein (282aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Protease HtpX homolog id=5799559 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
putative peptidase M48 Ste24p
rifcsphigho2_02_scaffold_1140_4
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3837..4550)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Pleurocapsa sp. PCC 7319 RepID=UPI00034CF3F3
oxidoreductase
Oxidoreductase {ECO:0000313|EMBL:BAK98043.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM
rifcsphigho2_02_scaffold_1140_5
AR11, Woesearchaeaota, DPANN, Archaea

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4787..5290
DNA (504bp) protein (168aa)
Transcription factor E Tax=AR11
transcription factor E; K03136 transcription initiation factor TFIIE subunit alpha id=5041815 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
transcription factor IIE (TFIIE) subunit alpha
rifcsphigho2_02_scaffold_1140_6

Not on your lists

comp(5344..5751)
DNA (408bp) protein (136aa)
TOPRIM domain-containing protein id=5050201 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
TOPRIM protein {ECO:0000313|EMBL:KHO44982.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Toprim protein
rifcsphigho2_02_scaffold_1140_7
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

6212..7282
DNA (1071bp) protein (357aa)
hypothetical protein; K00992 [EC:2.7.7.-] Tax=AR9
hypothetical protein; K00992 [EC:2.7.7.-] id=5050202 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_1140_8
CG_Woesearch_01, Woesearchaeota, Archaea

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7814..8803
DNA (990bp) protein (330aa)
rpl3p; 50S ribosomal protein L3P; K02906 large subunit ribosomal protein L3 Tax=CG_Woesearch_01
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 id=5042300 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L3
rifcsphigho2_02_scaffold_1140_9

Not on your lists


8805..9611
DNA (807bp) protein (269aa)
50S ribosomal protein L4 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL4_NANEQ id=5103253 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L4P {ECO:0000313|EMBL:AJS12340.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L4
rifcsphigho2_02_scaffold_1140_10
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


9608..9865
DNA (258bp) protein (86aa)
50S ribosomal protein L23P n=3 Tax=Thermococcus RepID=RL23_PYRKO id=5103254 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 Tax=CG_Woesearch_02
50S ribosomal protein L23P
rifcsphigho2_02_scaffold_1140_11

Not on your lists


9867..10601
DNA (735bp) protein (245aa)
50S ribosomal protein L2P {ECO:0000313|EMBL:AJS12466.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 id=5042303 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ribosomal protein L2
rifcsphigho2_02_scaffold_1140_12

Not on your lists


10598..10978
DNA (381bp) protein (127aa)
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps19p; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 id=5042304 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S15
rifcsphigho2_02_scaffold_1140_13

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10980..11492
DNA (513bp) protein (171aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 id=5041764 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
50S ribosomal protein L22P
rifcsphigho2_02_scaffold_1140_14

Not on your lists


11489..12238
DNA (750bp) protein (250aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GQK3_9ZZZZ
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S3
rifcsphigho2_02_scaffold_1140_15
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


12225..12431
DNA (207bp) protein (69aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=CG_Woesearch_02
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 id=5046846 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_02_scaffold_1140_16
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

12424..12732
DNA (309bp) protein (103aa)
Protein translation factor SUI1 homolog n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I9X3_METCZ
translation initiation factor 1 (eif-1/sui1); K03113 translation initiation factor 1 Tax=CG_Woesearch_01
translation initiation factor 1 (eIF-1/SUI1)
rifcsphigho2_02_scaffold_1140_17
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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12866..13162
DNA (297bp) protein (99aa)
30S ribosomal protein S17P n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MBC5_9EURY
30S ribosomal protein S17P
30S ribosomal protein S17P {ECO:0000313|EMBL:AFV23345.1}; TaxID=1094980 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus ps
rifcsphigho2_02_scaffold_1140_18

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13163..13564
DNA (402bp) protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl14p; 50S ribosomal protein L14P; K02874 large subunit ribosomal protein L14 id=5042311 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14P
rifcsphigho2_02_scaffold_1140_19

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13681..14052
DNA (372bp) protein (124aa)
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 id=5042312 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L24
rifcsphigho2_02_scaffold_1140_20
AR15, Woesearchaeaota, DPANN, Archaea

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14045..14719
DNA (675bp) protein (225aa)
30S ribosomal protein S4e id=5800051 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S4e Tax=AR15
rps4e; 30S ribosomal protein S4e
rifcsphigho2_02_scaffold_1140_21
CG_Woesearch_02, Woesearchaeota, Archaea

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14721..15227
DNA (507bp) protein (169aa)
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=CG_Woesearch_02
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5042314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
rifcsphigho2_02_scaffold_1140_22
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

15229..15459
DNA (231bp) protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 Tax=CG_Woesearch_01
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5041773 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
SSU ribosomal protein S14P
rifcsphigho2_02_scaffold_1140_23
CG_Woesearch_02, Woesearchaeota, Archaea

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15667..16056
DNA (390bp) protein (130aa)
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=CG_Woesearch_02
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 id=5042316 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S8
rifcsphigho2_02_scaffold_1140_24

Not on your lists


16064..16594
DNA (531bp) protein (177aa)
50S ribosomal protein L6 n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AFW1_PYRYC
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS12291.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6P
rifcsphigho2_02_scaffold_1140_25

Not on your lists

16596..17177
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037197A6
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO51230.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
ribosomal protein L32e
rifcsphigho2_02_scaffold_1140_26
CG_Woesearch_02, Woesearchaeota, Archaea

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17174..17623
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000381F97D
LSU ribosomal protein l19e; K02885 large subunit ribosomal protein L19e Tax=CG_Woesearch_02
50S ribosomal protein L19e
rifcsphigho2_02_scaffold_1140_27

Not on your lists


17620..18189
DNA (570bp) protein (190aa)
50S ribosomal protein L18P n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZD8_METFV
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L18
rifcsphigho2_02_scaffold_1140_28
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


18182..18958
DNA (777bp) protein (259aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 Tax=CG_Woesearch_02
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5042321 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S5
rifcsphigho2_02_scaffold_1140_29
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists


18955..19296
DNA (342bp) protein (114aa)
rpl30p; 50S ribosomal protein L30P; K02907 large subunit ribosomal protein L30 Tax=CG_Woesearch_01
50S ribosomal protein L30P id=5800042 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rpl30p; 50S ribosomal protein L30
rifcsphigho2_02_scaffold_1140_30

Not on your lists


19298..19786
DNA (489bp) protein (163aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 id=5042323 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L15P
Displaying items 1-30 of 61 in total

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