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rifcsphigho2_01_scaffold_6326

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_6326_1

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2..685
DNA (684bp) protein (228aa)
riboflavin kinase, archaea type (EC:2.7.1.161)
riboflavin/FAD biosynthesis transcriptional regulator (EC:2.7.1.161); K07732 riboflavin kinase, archaea type [EC:2.7.1.161] id=5241330 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Riboflavin kinase, archaea type {ECO:0000313|EMBL:AJF60321.1}; EC=2.7.1.161 {ECO:0000313|EMBL:AJF60321.1};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_6326_2
RBG_13_Euryarchaeota_31_8_curated, Euryarchaeota, Archaea

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678..1163
DNA (486bp) protein (162aa)
riboflavin synthase (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=RBG_13_Euryarchaeota_31_8_curated
riboflavin synthase (EC:2.5.1.9)
Riboflavin synthase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7U5J0_9EURY
rifcsphigho2_01_scaffold_6326_3
Methanobrevibacter sp. AbM4, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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1182..1613
DNA (432bp) protein (144aa)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Methanobrevibacter sp. AbM4 RepID=R9SM84_9EURY
ribH; 6,7-dimethyl-8-ribityllumazine synthase RibH
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00
rifcsphigho2_01_scaffold_6326_4
Halanaerobium saccharolyticum, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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1627..2877
DNA (1251bp) protein (417aa)
ribBA; riboflavin biosynthesis bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase-2 (EC:3.5.4.25 4.1.99.12)
Riboflavin biosynthesis protein RibBA n=1 Tax=Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 RepID=M5DZI0_9FIRM
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=1293054 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Hala
rifcsphigho2_01_scaffold_6326_5

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2909..3319
DNA (411bp) protein (137aa)
hypothetical protein
seg id=5241855 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Uncharacterized protein {ECO:0000313|EMBL:AJF60846.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_6326_6
unknown

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3349..4005
DNA (657bp) protein (219aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6326_7
R_OD1_44_24, Parcubacteria, Bacteria

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comp(4101..4751)
DNA (651bp) protein (217aa)
endonuclease III (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] Tax=RIFCSPLOWO2_01_FULL_OD1_44_24_curated
DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (EC:3.2.2.- 4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] id=5048737 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
endonuclease III (EC:4.2.99.18)
rifcsphigho2_01_scaffold_6326_8
GWA2_RIF03_38_11_curated, RIF3, Bacteria

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comp(4757..6802)
DNA (2046bp) protein (682aa)
hypothetical protein; K06888 Tax=GWA2_RIF03_38_11_curated
Uncharacterized protein id=2119302 bin=GWD2_Deltaproteobacteria_55_8 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
rifcsphigho2_01_scaffold_6326_9
AR10, Diapherotrites, DPANN, Archaea

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comp(6919..7947)
DNA (1029bp) protein (343aa)
phosphoesterase RecJ protein
phosphoesterase RecJ domain-containing protein; K06881 phosphoesterase RecJ domain-containing protein id=5241850 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
phosphoesterase RecJ domain-containing protein; K06881 phosphoesterase RecJ domain-containing protein Tax=AR10
rifcsphigho2_01_scaffold_6326_10

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comp(7953..8309)
DNA (357bp) protein (119aa)
Prefoldin beta subunit {ECO:0000313|EMBL:KHO55686.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
prefoldin, chaperonin cofactor, prefoldin beta subunit
GimC; prefoldin, chaperonin cofactor; K04798 prefoldin beta subunit id=5241849 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_6326_11
Methanobacterium sp. Maddingley MBC34, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(8321..8602)
DNA (282bp) protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:EKQ53473.1}; TaxID=1220534 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacte
rifcsphigho2_01_scaffold_6326_12
Palaeococcus pacificus, Palaeococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(8553..9035)
DNA (483bp) protein (161aa)
ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Thermococcus zilligii RepID=UPI00029B2CCA
ribonucleotide-diphosphate reductase subunit beta
Probable Brix domain-containing ribosomal biogenesis protein {ECO:0000256|HAMAP-Rule:MF_00699}; TaxID=1343739 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Palaeococcu
rifcsphigho2_01_scaffold_6326_13

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comp(9179..9481)
DNA (303bp) protein (101aa)
50S ribosomal protein L37Ae {ECO:0000256|HAMAP-Rule:MF_00327}; Ribosomal protein L43e {ECO:0000256|HAMAP-Rule:MF_00327}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
large subunit ribosomal protein L37Ae
50S ribosomal protein L37Ae; K02921 large subunit ribosomal protein L37Ae id=5241846 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_6326_14

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comp(9532..10329)
DNA (798bp) protein (266aa)
Exosome complex component RRP42 {ECO:0000313|EMBL:KHO55689.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
exosome complex component RRP42
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 id=5241845 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_6326_15
AR10, Diapherotrites, DPANN, Archaea

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comp(10329..11054)
DNA (726bp) protein (242aa)
exosome complex component RRP41
exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 id=5241844 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 Tax=AR10
rifcsphigho2_01_scaffold_6326_16

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comp(11051..11794)
DNA (744bp) protein (248aa)
Exosome complex component RRP4 {ECO:0000313|EMBL:KHO55691.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
exosome complex RNA-binding protein Rrp4
exosome complex RNA-binding protein Rrp4 id=5241843 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_6326_17
AR10, Diapherotrites, DPANN, Archaea

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comp(11787..12494)
DNA (708bp) protein (236aa)
ribosome maturation protein SDO1
ribosome maturation protein SBDS-like protein; K14574 ribosome maturation protein SDO1 id=5241842 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
ribosome maturation protein SBDS-like protein; K14574 ribosome maturation protein SDO1 Tax=AR10
rifcsphigho2_01_scaffold_6326_18

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comp(12507..13235)
DNA (729bp) protein (243aa)
Proteasome alpha subunit {ECO:0000313|EMBL:KHO55693.1}; EC=3.4.25.1 {ECO:0000313|EMBL:KHO55693.1};; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
psmA; proteasome alpha subunit (EC:3.4.25.1)
psmA; proteasome, subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] id=5241841 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_6326_19

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comp(13336..13677)
DNA (342bp) protein (114aa)
ribonuclease P/MRP protein subunit POP5 (EC:3.1.26.5)
ribonuclease P protein component 2; K03537 ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] id=5241839 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Ribonuclease P protein component 2 {ECO:0000256|HAMAP-Rule:MF_00755}; Short=RNase P component 2 {ECO:0000256|HAMAP-Rule:MF_00755};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00755};; Pop5 {ECO:0000256|HA
rifcsphigho2_01_scaffold_6326_20
unknown

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comp(13671..14372)
DNA (702bp) protein (234aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6326_21
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(14377..14850)
DNA (474bp) protein (158aa)
Phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyr
Phosphopantetheine adenylyltransferase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S326_THEOJ
rifcsphigho2_01_scaffold_6326_22
Hydrogenivirga sp. 128-5-R1-1, Hydrogenivirga, Aquificales, Aquificae, Aquificae, Bacteria

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comp(14847..15989)
DNA (1143bp) protein (381aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephospho-CoA kinase 2; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=3924
coaE; dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UZZ1_9AQUI
rifcsphigho2_01_scaffold_6326_23

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comp(16037..17422)
DNA (1386bp) protein (462aa)
Succinate-semialdehyde dehydrogenase (NAD(P)+) {ECO:0000313|EMBL:CEG11508.1}; EC=1.2.1.16 {ECO:0000313|EMBL:CEG11508.1};; TaxID=717931 species="unclassified sequences; metagenomes; ecological metageno
aldehyde dehydrogenase n=1 Tax=Calescamantes bacterium SCGC AAA471-M6 RepID=UPI0003B6970E
aldehyde dehydrogenase
rifcsphigho2_01_scaffold_6326_24
AR10, Diapherotrites, DPANN, Archaea

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comp(17419..18051)
DNA (633bp) protein (211aa)
Ribonuclease P protein component 3
Ribonuclease P protein component 3 id=5241837 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Ribonuclease P protein component 3 Tax=AR10
rifcsphigho2_01_scaffold_6326_25

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comp(18125..18679)
DNA (555bp) protein (185aa)
Large subunit ribosomal protein L15e {ECO:0000313|EMBL:KHO55699.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
50S ribosomal protein L15e, large subunit ribosomal protein L15e
rpl15e; 50S ribosomal protein L15e; K02877 large subunit ribosomal protein L15e id=5241836 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_6326_26
unknown

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comp(18802..19236)
DNA (435bp) protein (145aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6326_27
unknown

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comp(19250..20236)
DNA (987bp) protein (329aa)

This feature has no annotations

Displaying 27 items

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