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rifcsphigho2_01_scaffold_12835

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_12835_1

Not on your lists

comp(1..822)
DNA (822bp) protein (274aa)
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1412874 species="Archaea;
Phosphoglycerate kinase n=1 Tax=uncultured archaeon A07HR60 RepID=V4YMX7_9ARCH
rifcsphigho2_01_scaffold_12835_2
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(824..1252)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003707988
hypothetical protein Tax=CG_Woesearch_02
hypothetical protein
rifcsphigho2_01_scaffold_12835_3
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(1296..1811)
DNA (516bp) protein (172aa)
hypothetical protein
hypothetical protein Tax=CG_Pacearch_05
id=5103621 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsphigho2_01_scaffold_12835_4
CG_Pacearch_05, Pacearchaeota, Archaea

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comp(1879..2904)
DNA (1026bp) protein (342aa)
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] Tax=CG_Pacearch_05
Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=uncultured archaeon RepID=D1JI22_9ARCH
glyceraldehyde-3-phosphate dehydrogenase
rifcsphigho2_01_scaffold_12835_5

Not on your lists

2951..3838
DNA (888bp) protein (296aa)
phosphoribosyl transferase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] id=5042287 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:KHO46785.1}; EC=2.7.6.1 {ECO:0000313|EMBL:KHO46785.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
rifcsphigho2_01_scaffold_12835_6
GWA1_OP11_37_7, Woesebacteria, Microgenomates, Bacteria

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comp(3943..4821)
DNA (879bp) protein (293aa)
RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L1K5_THERP
RNA polymerase sigma factor rpoD
RNA polymerase sigma factor Tax=GWA1_OP11_37_7
rifcsphigho2_01_scaffold_12835_7

Not on your lists

comp(4835..5239)
DNA (405bp) protein (135aa)
prefoldin subunit alpha; K04797 prefoldin alpha subunit id=5048741 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Prefoldin subunit alpha {ECO:0000256|HAMAP-Rule:MF_00308}; GimC subunit alpha {ECO:0000256|HAMAP-Rule:MF_00308}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
GIM5; prefoldin subunit alpha
rifcsphigho2_01_scaffold_12835_8
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(5769..6173)
DNA (405bp) protein (135aa)
Putative uncharacterized protein n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VRS7_METIM id=5103276 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein Tax=CG_Pacearch_06
hypothetical protein
rifcsphigho2_01_scaffold_12835_9
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(6278..7663)
DNA (1386bp) protein (462aa)
Protein translocase subunit SecY n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TB98_METSL id=5103275 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=CG_Pacearch_03
Protein translocase subunit SecY
rifcsphigho2_01_scaffold_12835_10

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comp(7672..8091)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003770A48
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L15P
rifcsphigho2_01_scaffold_12835_11

Not on your lists


comp(8346..8753)
DNA (408bp) protein (136aa)
50S ribosomal protein L30P n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RE45_ARCPA
Marine sediment metagenome DNA, contig: S01H1_L01049 {ECO:0000313|EMBL:GAF74108.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
50S ribosomal protein L30P
rifcsphigho2_01_scaffold_12835_12
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

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comp(9054..9830)
DNA (777bp) protein (259aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 Tax=RBG_16_Pacearchaeota_35_8_curated
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5041779 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S5
rifcsphigho2_01_scaffold_12835_13

Not on your lists


comp(9974..10474)
DNA (501bp) protein (167aa)
50S ribosomal protein L18P n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HME9_ACIS0
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
ribosomal protein L18
rifcsphigho2_01_scaffold_12835_14

Not on your lists

comp(10471..10887)
DNA (417bp) protein (139aa)
Marine sediment metagenome DNA, contig: S12H4_S16718 {ECO:0000313|EMBL:GAJ13137.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsphigho2_01_scaffold_12835_15
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

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comp(10874..11218)
DNA (345bp) protein (115aa)
rpl32e; 50S ribosomal protein L32e
Tax=RBG_13_Pacearchaeota_33_26_curated
rifcsphigho2_01_scaffold_12835_16

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comp(11218..11832)
DNA (615bp) protein (205aa)
50S ribosomal protein L6 n=1 Tax=Methanotorris formicicus Mc-S-70 RepID=H1KXV8_9EURY
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS11707.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6
rifcsphigho2_01_scaffold_12835_17

Not on your lists


comp(11872..12252)
DNA (381bp) protein (127aa)
30S ribosomal protein S8 n=3 Tax=Methanotorris RepID=RS8_METIG id=5103267 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S8P, small subunit ribosomal protein S8 {ECO:0000313|EMBL:AJS12843.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8
rifcsphigho2_01_scaffold_12835_18
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(12718..12948)
DNA (231bp) protein (77aa)
SSU ribosomal protein S14P n=1 Tax=Candidatus Nanosalinarum sp. J07AB56 RepID=G0QB90_9EURY id=5103266 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein; K02954 small subunit ribosomal protein S14 Tax=CG_Pacearch_05
SSU ribosomal protein S14P
rifcsphigho2_01_scaffold_12835_19
unknown

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comp(13001..13090)
DNA (90bp) protein (30aa)

This feature has no annotations

rifcsphigho2_01_scaffold_12835_20

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comp(13087..13575)
DNA (489bp) protein (163aa)
50S ribosomal protein L5 n=2 Tax=Methanotorris RepID=F6BD87_METIK id=5103265 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L5P {ECO:0000313|EMBL:AJS12561.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5
rifcsphigho2_01_scaffold_12835_21
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(13743..14396)
DNA (654bp) protein (218aa)
30S ribosomal protein S4e n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=RS4E_UNCMA
30S ribosomal protein S4e; K02987 small subunit ribosomal protein S4e Tax=RBG_13_Pacearchaeota_36_9_curated
rps4e; 30S ribosomal protein S4e
rifcsphigho2_01_scaffold_12835_22

Not on your lists


comp(14386..14799)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372D201
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl24p; 50S ribosomal protein L24
rifcsphigho2_01_scaffold_12835_23

Not on your lists


comp(14915..15316)
DNA (402bp) protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 id=5046849 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L14P
rifcsphigho2_01_scaffold_12835_24

Not on your lists


comp(15313..15669)
DNA (357bp) protein (119aa)
30S ribosomal protein S17P n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KSU2_ARCVS
30S ribosomal protein S17P {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
SSU ribosomal protein S11e (S17p)
rifcsphigho2_01_scaffold_12835_25
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(15695..15994)
DNA (300bp) protein (100aa)
Protein translation factor SUI1 homolog n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VQK7_9EURY
translation factor SUI1-like protein; K03113 translation initiation factor 1 Tax=RBG_13_Pacearchaeota_36_9_curated
translation initiation factor SUI1
rifcsphigho2_01_scaffold_12835_26
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(16172..16372)
DNA (201bp) protein (67aa)
Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_01_scaffold_12835_27

Not on your lists


comp(16653..17432)
DNA (780bp) protein (260aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GQH2_9ZZZZ
30S ribosomal protein S3 {ECO:0000313|EMBL:AJS12408.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S3
rifcsphigho2_01_scaffold_12835_28

Not on your lists


comp(17434..18120)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Phytophthora parasitica P1569 RepID=V9FMV7_PHYPR
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl22p; 50S ribosomal protein L22P
rifcsphigho2_01_scaffold_12835_29

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comp(18218..18646)
DNA (429bp) protein (143aa)
30S ribosomal protein S19 n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=RS19_METMA
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps19p; 30S ribosomal protein S19
rifcsphigho2_01_scaffold_12835_30

Not on your lists


comp(18889..19626)
DNA (738bp) protein (246aa)
50S ribosomal protein L2P {ECO:0000313|EMBL:AJS12371.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2 id=5800061 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L2
Displaying items 1-30 of 31 in total

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