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rifcsplowo2_01_scaffold_10671

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_10671_1
unknown

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comp(1..69)
DNA (69bp) protein (23aa)

This feature has no annotations

rifcsplowo2_01_scaffold_10671_2
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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comp(75..905)
DNA (831bp) protein (277aa)
Dihydroorotate oxidase (Dihydroorotate dehydrogenase B) electron-transfer subunit {ECO:0000313|EMBL:KHE92222.1}; EC=1.3.98.1 {ECO:0000313|EMBL:KHE92222.1};; TaxID=237368 species="Bacteria; Planctomyce
pyrK; dihydroorotate dehydrogenase electron transfer subunit PyrK (EC:1.3.98.1)
Dihydroorotate oxidase electron-transfer subunit n=1 Tax=planctomycete KSU-1 RepID=I3IRA0_9PLAN
rifcsplowo2_01_scaffold_10671_3
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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comp(1126..2025)
DNA (900bp) protein (300aa)
dihydroorotate dehydrogenase fumarate (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule
Dihydroorotate dehydrogenase id=4162447 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
rifcsplowo2_01_scaffold_10671_4

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comp(2027..2482)
DNA (456bp) protein (152aa)
pyrI; aspartate carbamoyltransferase (EC:2.1.3.2)
Uncharacterized protein {ECO:0000313|EMBL:KKM86492.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Aspartate carbamoyltransferase regulatory chain id=4922845 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
rifcsplowo2_01_scaffold_10671_5

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comp(2479..3396)
DNA (918bp) protein (306aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1579371 species="Ar
pyrB; aspartate carbamoyltransferase catalytic subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=planctomycete KSU-1 RepID=I3IH98_9PLAN
rifcsplowo2_01_scaffold_10671_6
unknown

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comp(3525..3908)
DNA (384bp) protein (128aa)

This feature has no annotations

rifcsplowo2_01_scaffold_10671_7
unknown

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4029..4289
DNA (261bp) protein (87aa)

This feature has no annotations

rifcsplowo2_01_scaffold_10671_8

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comp(4311..4775)
DNA (465bp) protein (155aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO51723.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
id=5103449 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsplowo2_01_scaffold_10671_9
unknown

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comp(4883..4978)
DNA (96bp) protein (32aa)

This feature has no annotations

rifcsplowo2_01_scaffold_10671_10
unknown

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comp(5010..5144)
DNA (135bp) protein (45aa)

This feature has no annotations

rifcsplowo2_01_scaffold_10671_11

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5268..5723
DNA (456bp) protein (152aa)
AsnC family transcriptional regulator id=5042260 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
AsnC family transcriptional regulator {ECO:0000313|EMBL:KHO46758.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Transcriptional regulator, lrp family
rifcsplowo2_01_scaffold_10671_12
unknown

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comp(5736..6071)
DNA (336bp) protein (112aa)

This feature has no annotations

rifcsplowo2_01_scaffold_10671_13
AR15, Woesearchaeaota, DPANN, Archaea

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comp(6072..9212)
DNA (3141bp) protein (1047aa)
Isoleucine--tRNA ligase Tax=AR15
Isoleucine--tRNA ligase id=5800603 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
isoleucyl-tRNA synthetase
rifcsplowo2_01_scaffold_10671_14
unknown

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comp(9695..10747)
DNA (1053bp) protein (351aa)

This feature has no annotations

rifcsplowo2_01_scaffold_10671_15
unknown

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comp(10862..11461)
DNA (600bp) protein (200aa)

This feature has no annotations

rifcsplowo2_01_scaffold_10671_16
CG_Aenigma_01, Aenigmaarchaeota, Archaea

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comp(11448..11597)
DNA (150bp) protein (50aa)
Tax=CG_Aenigma_01
rifcsplowo2_01_scaffold_10671_17
unknown

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11782..12087
DNA (306bp) protein (102aa)

This feature has no annotations

rifcsplowo2_01_scaffold_10671_18
R_OD1_Yanofskybacteria_49_25, Yanofskybacteria, Parcubacteria, Bacteria

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comp(12193..12678)
DNA (486bp) protein (162aa)
dihydrofolate reductase (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3] Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_49_25_curated
dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=Pseudoalteromonas sp. BSi20652 RepID=G7EJQ9_9GAMM
rifcsplowo2_01_scaffold_10671_19
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(12694..12960)
DNA (267bp) protein (89aa)
Putative toxin RelE4 n=1 Tax=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) RepID=RELE4_METJA
hypothetical protein
Tax=BJP_IG2158_Thermoplasmatales_53_16
rifcsplowo2_01_scaffold_10671_20
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(12962..13195)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PU07_METMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM32246.1}; TaxID=192952 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina ma
rifcsplowo2_01_scaffold_10671_21

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comp(13349..14194)
DNA (846bp) protein (282aa)
thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45] id=5046293 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Thymidylate synthase {ECO:0000313|EMBL:KHO46094.1}; EC=2.1.1.45 {ECO:0000313|EMBL:KHO46094.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
thymidylate synthase (EC:2.1.1.45)
rifcsplowo2_01_scaffold_10671_22
unknown

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14339..15985
DNA (1647bp) protein (549aa)

This feature has no annotations

rifcsplowo2_01_scaffold_10671_23
AR19, Pacearchaeaota, DPANN, Archaea

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comp(16001..16411)
DNA (411bp) protein (137aa)
hypothetical protein
Tax=AR19
rifcsplowo2_01_scaffold_10671_24

Not on your lists

comp(16405..16923)
DNA (519bp) protein (173aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55361.1}; TaxID=1579377 species="Archaea.;" source="archaeon GW2011_AR19.;"
hypothetical protein id=5050692 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
Displaying 24 items

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