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rifcsplowo2_01_scaffold_9623

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_9623_1

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comp(3..1415)
DNA (1413bp) protein (471aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO49222.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
seg id=5041843 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_9623_2

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comp(1488..2120)
DNA (633bp) protein (211aa)
rnpA; ribonuclease P protein component 3 (EC:3.1.26.5); K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] id=5046310 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribonuclease P/MRP protein subunit RPP1 {ECO:0000313|EMBL:KHO46111.1}; EC=3.1.26.5 {ECO:0000313|EMBL:KHO46111.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Ribonuclease P protein component 3
rifcsplowo2_01_scaffold_9623_3

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2328..2879
DNA (552bp) protein (184aa)
tbpE; transcription factor; K03120 transcription initiation factor TFIID TATA-box-binding protein id=5046314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rul
TATA-box-binding protein
rifcsplowo2_01_scaffold_9623_4

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2969..4984
DNA (2016bp) protein (672aa)
mcm; DNA replication initiator protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] id=5046315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA replication initiator protein, replicative DNA helicase Mcm {ECO:0000313|EMBL:KHO46116.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO46116.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.
DNA replication initiator Cdc21/Cdc54
rifcsplowo2_01_scaffold_9623_5
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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4992..5669
DNA (678bp) protein (226aa)
Putative uncharacterized protein Tax=RBG_13_Woesearchaeota_36_6_curated
Nucleic acid-binding, OB-fold-like id=5800076 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_9623_6
AR11, Woesearchaeaota, DPANN, Archaea

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comp(5661..6512)
DNA (852bp) protein (284aa)
hypothetical protein
Uncharacterized membrane protein Tax=AR11
Uncharacterized membrane protein id=5041824 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_9623_7

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6600..7013
DNA (414bp) protein (138aa)
Translation initiation factor aIF-2, beta subunit, translation initiation factor 2 subunit 2 {ECO:0000313|EMBL:KHO49209.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
translation initiation factor IF-2 subunit beta; K03238 translation initiation factor 2 subunit 2 id=5041823 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Translation initiation factor 2 subunit beta
rifcsplowo2_01_scaffold_9623_8
CG_Woesearch_02, Woesearchaeota, Archaea

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7016..7330
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8A2_METEZ id=5103228 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein; K09148 hypothetical protein Tax=CG_Woesearch_02
hypothetical protein
rifcsplowo2_01_scaffold_9623_9
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(7327..10869)
DNA (3543bp) protein (1181aa)
DNA polymerase II large subunit (EC:2.7.7.7); K02322 DNA polymerase II large subunit [EC:2.7.7.7] Tax=CG_Woesearch_02
DNA polymerase II large subunit n=1 Tax=nanoarchaeote Nst1 RepID=R1E5T5_9ARCH id=5103156 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA polymerase II large subunit
rifcsplowo2_01_scaffold_9623_10
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(10870..12465)
DNA (1596bp) protein (532aa)
DNA polymerase II small subunit (EC:2.7.7.7); K02323 DNA polymerase II small subunit [EC:2.7.7.7] Tax=CG_Woesearch_02
DNA polymerase II small subunit (EC:2.7.7.7); K02323 DNA polymerase II small subunit [EC:2.7.7.7] id=5046338 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsplowo2_01_scaffold_9623_11

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comp(12479..13684)
DNA (1206bp) protein (402aa)
ORC1-type DNA replication protein n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QF40_9EURY id=5103158 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
ORC1-type DNA replication protein
ORC1-type DNA replication protein {ECO:0000256|HAMAP-Rule:MF_01407}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_9623_12
AR15, Woesearchaeaota, DPANN, Archaea

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13919..14113
DNA (195bp) protein (65aa)
NEQ098 id=5800103 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
NEQ098 Tax=AR15
hypothetical protein
rifcsplowo2_01_scaffold_9623_13

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14107..14667
DNA (561bp) protein (187aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO46833.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein id=5042335 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_9623_14
AR11, Woesearchaeaota, DPANN, Archaea

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14731..14919
DNA (189bp) protein (63aa)
seg id=5800104 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=AR11
rifcsplowo2_01_scaffold_9623_15

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comp(14921..15307)
DNA (387bp) protein (129aa)
resolvase, holliday junction-type; K03552 holliday junction resolvase, archaea type id=5046341 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Putative archaeal holliday junction resolvase {ECO:0000313|EMBL:AJF61437.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
Resolvase, Holliday junction-type
rifcsplowo2_01_scaffold_9623_16
CG_Pacearch_04, Pacearchaeota, Archaea

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comp(15310..16200)
DNA (891bp) protein (297aa)
rnz; ribonuclease Z (EC:3.1.26.11); K00784 ribonuclease Z [EC:3.1.26.11] Tax=CG_Pacearch_04
rnz; ribonuclease Z Rnz (EC:3.1.26.11); K00784 ribonuclease Z [EC:3.1.26.11] id=5046343 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
RNAse Z
rifcsplowo2_01_scaffold_9623_17
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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16401..16955
DNA (555bp) protein (185aa)
tRNA-splicing endonuclease subunit alpha; K01170 tRNA-intron endonuclease, archaea type [EC:3.1.27.9] Tax=RBG_13_Woesearchaeota_36_6_curated
tRNA-splicing endonuclease subunit alpha (EC:3.1.27.9); K01170 tRNA-intron endonuclease, archaea type [EC:3.1.27.9] id=5046344 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
tRNA-intron endonuclease
rifcsplowo2_01_scaffold_9623_18
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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17099..18022
DNA (924bp) protein (308aa)
id=5046345 Tax=RBG_13_Woesearchaeota_36_6_curated
Putative uncharacterized protein id=5800109 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsplowo2_01_scaffold_9623_19
CG_Woesearch_02, Woesearchaeota, Archaea

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18024..19061
DNA (1038bp) protein (346aa)
Flap structure-specific endonuclease; K04799 flap endonuclease-1 [EC:3.-.-.-] Tax=CG_Woesearch_02
rad2; flap endonuclease-1; K04799 flap endonuclease-1 [EC:3.-.-.-] id=5046346 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
flap endonuclease-1
rifcsplowo2_01_scaffold_9623_20
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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19064..19897
DNA (834bp) protein (278aa)
hypothetical protein; K15429 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000376F0A7
hypothetical protein
rifcsplowo2_01_scaffold_9623_21
unknown

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comp(20018..20506)
DNA (489bp) protein (163aa)

This feature has no annotations

rifcsplowo2_01_scaffold_9623_22

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comp(20508..21650)
DNA (1143bp) protein (381aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO53035.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
NEQ186 id=5800112 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
proteasome-activating nucleotidase
rifcsplowo2_01_scaffold_9623_23
unknown

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comp(21707..21904)
DNA (198bp) protein (66aa)

This feature has no annotations

rifcsplowo2_01_scaffold_9623_24

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comp(21906..22856)
DNA (951bp) protein (317aa)
leucyl aminopeptidase id=5043745 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Leucyl aminopeptidase {ECO:0000313|EMBL:KHO47061.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
leucyl aminopeptidase
rifcsplowo2_01_scaffold_9623_25
AR11, Woesearchaeaota, DPANN, Archaea

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comp(22858..24630)
DNA (1773bp) protein (591aa)
hypothetical protein Tax=AR11
Thermophilic metalloprotease-like id=5800113 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_9623_26

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comp(24654..25742)
DNA (1089bp) protein (363aa)
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:KHO53032.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Xaa-Pro dipeptidase id=5800114 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
X-Pro aminopeptidase
rifcsplowo2_01_scaffold_9623_27

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25787..26776
DNA (990bp) protein (330aa)
Processing peptidase {ECO:0000313|EMBL:KHO49690.1}; EC=3.4.24.64 {ECO:0000313|EMBL:KHO49690.1};; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
processing peptidase (EC:3.4.24.64) id=5041801 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
putative Zn-dependent peptidase
rifcsplowo2_01_scaffold_9623_28

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comp(26857..27186)
DNA (330bp) protein (110aa)
Tyrosine--tRNA ligase {ECO:0000256|SAAS:SAAS00011232}; EC=6.1.1.1 {ECO:0000256|SAAS:SAAS00011232};; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Uncharacterized protein id=5800116 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Displaying 28 items

View Taxonomy