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rifcsplowo2_01_scaffold_2626

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_2626_1
CG_Woesearch_01, Woesearchaeota, Archaea

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2..2665
DNA (2664bp) protein (888aa)
hypothetical protein Tax=CG_Woesearch_01
parallel beta-helix repeat-containing protein id=5045956 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Cell surface protein
rifcsplowo2_01_scaffold_2626_2

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2722..3768
DNA (1047bp) protein (349aa)
id=5048011 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45605.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsplowo2_01_scaffold_2626_3
CG_Woesearch_02, Woesearchaeota, Archaea

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3859..5790
DNA (1932bp) protein (644aa)
amino acid permease-associated protein Tax=CG_Woesearch_02
integral membrane transport protein id=5044314 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
amino acid permease-associated protein
rifcsplowo2_01_scaffold_2626_4
unknown

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5919..6080
DNA (162bp) protein (54aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2626_5
unknown

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6172..7413
DNA (1242bp) protein (414aa)
Transporter, monovalent cation:proton antiporter-2 family protein n=1 Tax=Carnobacterium maltaromaticum LMA28 RepID=K8E279_CARML id=5103851 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Transporter, monovalent cation:proton antiporter-2 family protein n=1 Tax=Carnobacterium maltaromaticum LMA28 RepID=K8E279_CARML Tax=AR20
Transporter, monovalent cation:proton antiporter-2 family protein
rifcsplowo2_01_scaffold_2626_6

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comp(7509..8123)
DNA (615bp) protein (205aa)
Ribosomal protein S7P (RP-S7, rpsG) {ECO:0000313|EMBL:AIF00798.1}; TaxID=1457870 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/III euryarchaeote KM3_139_
30S ribosomal protein S7P; K02992 small subunit ribosomal protein S7 id=5043965 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S7
rifcsplowo2_01_scaffold_2626_7

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comp(8171..8608)
DNA (438bp) protein (146aa)
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU004490}; TaxID=1457870 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/I
rps12P; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 id=5044114 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
30S ribosomal protein S12
rifcsplowo2_01_scaffold_2626_8

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comp(8758..9147)
DNA (390bp) protein (130aa)
Probable transcription termination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1457870 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/III euryar
transcription elongation factor NusA-like protein; K02600 N utilization substance protein A id=5043967 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsplowo2_01_scaffold_2626_9
AR11, Woesearchaeaota, DPANN, Archaea

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comp(9179..9466)
DNA (288bp) protein (96aa)
NEQ179 Tax=AR11
NEQ179 id=5799591 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L30e
rifcsplowo2_01_scaffold_2626_10
AR15, Woesearchaeaota, DPANN, Archaea

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comp(9787..10923)
DNA (1137bp) protein (379aa)
DNA-directed RNA polymerase, subunit a' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit A'' id=5800703 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase subunit A'' Tax=AR15
rifcsplowo2_01_scaffold_2626_11

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comp(10951..13641)
DNA (2691bp) protein (897aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
DNA-directed RNA polymerase subunit A' (EC:2.7.7.48); K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] id=5043970 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
rifcsplowo2_01_scaffold_2626_12

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comp(13683..15521)
DNA (1839bp) protein (613aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU000431}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU000431};; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
rpoB2; DNA-directed RNA polymerase, subunit B' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] id=5043971 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
rifcsplowo2_01_scaffold_2626_13
AR15, Woesearchaeaota, DPANN, Archaea

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comp(15529..17013)
DNA (1485bp) protein (495aa)
DNA-directed RNA polymerase id=5800700 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase Tax=AR15
DNA-directed RNA polymerase
rifcsplowo2_01_scaffold_2626_14

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comp(17006..17290)
DNA (285bp) protein (95aa)
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
DNA-directed RNA polymerase subunit H (EC:2.7.7.6)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000373033A
rifcsplowo2_01_scaffold_2626_15
unknown

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comp(17894..18511)
DNA (618bp) protein (206aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2626_16
unknown

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comp(18637..18981)
DNA (345bp) protein (115aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2626_17
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(19258..20763)
DNA (1506bp) protein (502aa)
hypothetical protein
transmembrane_regions Tax=CG_Woesearch_02
seg id=5800566 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_2626_18
unknown

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21034..21177
DNA (144bp) protein (48aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2626_19
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(21351..21773)
DNA (423bp) protein (141aa)
Potassium channel protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q468D3_METBF
Potassium channel protein
Potassium channel protein {ECO:0000313|EMBL:AAZ71759.1}; TaxID=269797 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina
rifcsplowo2_01_scaffold_2626_20
unknown

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21859..22617
DNA (759bp) protein (253aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2626_21
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

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comp(22621..24687)
DNA (2067bp) protein (689aa)
SMC domain protein n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A5V4_NITMS id=5103605 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:KKU99675.1}; Flags: Fragment;; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
SMC protein
rifcsplowo2_01_scaffold_2626_22
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(24755..25627)
DNA (873bp) protein (291aa)
glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2] Tax=CG_Woesearch_01
ROK family protein n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7TB10_CLOSG
ROK family protein
rifcsplowo2_01_scaffold_2626_23

Not on your lists

comp(25637..26626)
DNA (990bp) protein (330aa)
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8)
Bifunctional phosphoglucose/phosphomannose isomerase id=5800523 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Bifunctional phosphoglucose/phosphomannose isomerase {ECO:0000313|EMBL:AJF61854.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
rifcsplowo2_01_scaffold_2626_24
GWA2_OP11_38_24, Daviesbacteria, Microgenomates, Bacteria

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26815..27408
DNA (594bp) protein (198aa)
50S ribosomal protein L15e Tax=GWA2_OP11_38_24
50S ribosomal protein L15e id=5799715 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L15
Displaying 24 items

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