ggKbase home page

rifcsplowo2_01_scaffold_101904

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_101904_1
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(1..447)
DNA (447bp) protein (149aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] Tax=CG_Pacearch_06
Base excision DNA repair protein, HhH-GPD family n=2 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IE81_ACIB4 id=5103570 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Base excision DNA repair protein, HhH-GPD family
rifcsplowo2_01_scaffold_101904_2
unknown

Not on your lists

comp(450..671)
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Methanococcus maripaludis RepID=G0H4T0_METMI id=5103799 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Putative uncharacterized protein n=1 Tax=Methanococcus maripaludis RepID=G0H4T0_METMI Tax=AR20
hypothetical protein
rifcsplowo2_01_scaffold_101904_3
CG_Micra_04, Micraarchaeota, Archaea

Not on your lists

comp(938..1663)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000380BDC3
transcriptional regulator TrmB Tax=CG_Micra_04
transcriptional regulator TrmB
rifcsplowo2_01_scaffold_101904_4
unknown

Not on your lists

comp(1837..1950)
DNA (114bp) protein (38aa)

This feature has no annotations

rifcsplowo2_01_scaffold_101904_5
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1985..2512)
DNA (528bp) protein (176aa)
Uncharacterized protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=Q9A9U3_CAUCR
AAA domain ATPase
Uncharacterized protein {ECO:0000313|EMBL:AAK22853.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter cresce
rifcsplowo2_01_scaffold_101904_6
unknown

Not on your lists

comp(2509..2727)
DNA (219bp) protein (73aa)

This feature has no annotations

rifcsplowo2_01_scaffold_101904_7
unknown

Not on your lists

2836..2976
DNA (141bp) protein (47aa)

This feature has no annotations

rifcsplowo2_01_scaffold_101904_8
RBG_13_OD1_Falkowbacteria_39_14_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

2987..3424
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B525_HERA2
hypothetical protein Tax=RBG_13_OD1_Falkowbacteria_39_14_curated
hypothetical protein
rifcsplowo2_01_scaffold_101904_9
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

3418..4005
DNA (588bp) protein (196aa)
polynucleotide adenylyltransferase/metal dependent phosphohydrolase; K00970 poly(A) polymerase [EC:2.7.7.19] Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
hypothetical protein n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B55C66
poly A polymerase
rifcsplowo2_01_scaffold_101904_10
unknown

Not on your lists

4002..4418
DNA (417bp) protein (139aa)

This feature has no annotations

rifcsplowo2_01_scaffold_101904_11
unknown

Not on your lists

comp(4419..4940)
DNA (522bp) protein (174aa)

This feature has no annotations

rifcsplowo2_01_scaffold_101904_12
unknown

Not on your lists

comp(4937..5071)
DNA (135bp) protein (45aa)

This feature has no annotations

rifcsplowo2_01_scaffold_101904_13
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(5049..5453)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Ferroplasma sp. Type II RepID=T0MAY2_9EURY
signal transduction protein with CBS domains Tax=CG_Pacearch_06
signal-transduction protein with CBS domains
rifcsplowo2_01_scaffold_101904_14
unknown

Not on your lists

comp(5488..6234)
DNA (747bp) protein (249aa)

This feature has no annotations

rifcsplowo2_01_scaffold_101904_15
R_OP11_Levybacteria_40_16, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(6274..6666)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FT78_9BACT
Putative uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Levybacteria_40_16_curated
rifcsplowo2_01_scaffold_101904_16

Not on your lists

6751..6951
DNA (201bp) protein (67aa)
Valine--tRNA ligase n=1 Tax=uncultured archaeon RepID=D1J9A9_9ARCH id=5103313 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Suspect SCG annotation. See neighboring gene [rifcsplowo2_01_scaffold_101904_17].
Valine-tRNA ligase
Marine sediment metagenome DNA, contig: S12H4_S15121 {ECO:0000313|EMBL:GAJ10265.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsplowo2_01_scaffold_101904_17
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists


6909..7286
DNA (378bp) protein (126aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=CG_Pacearch_03
Valine--tRNA ligase id=5800309 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Valine-tRNA ligase
Displaying 17 items

View Taxonomy