ggKbase home page

rifcsphigho2_12_scaffold_8417

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_12_scaffold_8417_1
unknown

Not on your lists

comp(1..615)
DNA (615bp) protein (205aa)

This feature has no annotations

rifcsphigho2_12_scaffold_8417_2

Not on your lists

comp(629..841)
DNA (213bp) protein (71aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO52452.1}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
rifcsphigho2_12_scaffold_8417_3

Not on your lists

comp(846..1544)
DNA (699bp) protein (233aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO52451.1}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
seg id=5041711 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_12_scaffold_8417_4
R_RIF_OD1_06_39_25, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(1644..2162)
DNA (519bp) protein (173aa)
hypothetical protein
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_06_39_25_curated
hypothetical protein id=5049638 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_12_scaffold_8417_5
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(2237..2482)
DNA (246bp) protein (82aa)
hypothetical protein Tax=CG_Pacearch_06
hypothetical protein
hypothetical protein id=5041719 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_12_scaffold_8417_6

Not on your lists

comp(2498..2899)
DNA (402bp) protein (134aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO49668.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
PROKAR_LIPOPROTEIN id=5800408 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_12_scaffold_8417_7

Not on your lists

comp(2896..3300)
DNA (405bp) protein (135aa)
hypothetical protein
seg id=5041713 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO47965.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
rifcsphigho2_12_scaffold_8417_8
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(3307..3462)
DNA (156bp) protein (52aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036FABAB
Tax=AR9
rifcsphigho2_12_scaffold_8417_9
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(3509..5857)
DNA (2349bp) protein (783aa)
heavy-metal transporting P-type ATPase (EC:3.6.3.4); K01533 Cu2+-exporting ATPase [EC:3.6.3.4] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ccb:Clocel_1523 copper-translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] id=129883 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
heavy-metal transporting P-type ATPase (EC:3.6.3.4)
rifcsphigho2_12_scaffold_8417_10
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(5857..6183)
DNA (327bp) protein (109aa)
ArsR family transcriptional regulator Tax=CG_Pacearch_05
ArsR family transcriptional regulator id=5044094 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
transcriptional regulator
rifcsphigho2_12_scaffold_8417_11
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

6253..6732
DNA (480bp) protein (160aa)
"Winged helix" DNA-binding domain id=5800418 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
"Winged helix" DNA-binding domain Tax=AR15
GntR family transcriptional regulator
rifcsphigho2_12_scaffold_8417_12
Desulfosporosinus sp. I2, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6734..8260)
DNA (1527bp) protein (509aa)
Iron-sulfur cluster-binding protein n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EFS2_CLOPA
Ferrous iron transport permease EfeU {ECO:0000313|EMBL:KJR44310.1}; TaxID=1617025 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosin
4Fe-4S binding domain-containing protein
rifcsphigho2_12_scaffold_8417_13
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

8380..8820
DNA (441bp) protein (147aa)
Putative uncharacterized protein id=5800417 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Putative uncharacterized protein Tax=AR15
CopG family transcriptional regulator
rifcsphigho2_12_scaffold_8417_14
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

8843..9229
DNA (387bp) protein (129aa)
Tax=CG_Pacearch_02
rifcsphigho2_12_scaffold_8417_15
unknown

Not on your lists

9245..9454
DNA (210bp) protein (70aa)

This feature has no annotations

rifcsphigho2_12_scaffold_8417_16
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(9708..10322)
DNA (615bp) protein (205aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K03653 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] Tax=CG_Woesearch_02
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Probable N-glycosylase/DNA lyase n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RZL6_FERPA
rifcsphigho2_12_scaffold_8417_17
GWA1_OD1_36_12, Parcubacteria, Bacteria

Not on your lists

comp(10319..10780)
DNA (462bp) protein (154aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CVL3_9ARCH
Bacterioferritin comigratory protein {ECO:0000313|EMBL:KKP92469.1}; TaxID=1618782 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_36_12.;"
alkyl hydroperoxide reductase
rifcsphigho2_12_scaffold_8417_18
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(10847..11542)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003650638
phosphoesterase; K06953 Tax=AR9
Phosphoesterase
rifcsphigho2_12_scaffold_8417_19
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

11595..12266
DNA (672bp) protein (224aa)
Tax=AR17
rifcsphigho2_12_scaffold_8417_20
unknown

Not on your lists

comp(12263..12586)
DNA (324bp) protein (108aa)

This feature has no annotations

rifcsphigho2_12_scaffold_8417_21

Not on your lists

comp(12639..15251)
DNA (2613bp) protein (871aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] id=5049679 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
ATP-dependent helicase Lhr and Lhr-like protein helicase {ECO:0000313|EMBL:KHO53536.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO53536.1};; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
DEAD/H associated protein
rifcsphigho2_12_scaffold_8417_22

Not on your lists

15407..16060
DNA (654bp) protein (218aa)
Putative metal-dependent hydrolase n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7T2I8_9ARCH
Threonyl/alanyl tRNA synthetase SAD {ECO:0000313|EMBL:KHO51196.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
threonyl/alanyl tRNA synthetase SAD
rifcsphigho2_12_scaffold_8417_23
R_OD1_Magasanikbacteria_33_17, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(16110..16670)
DNA (561bp) protein (187aa)
Superoxide dismutase (EC:1.15.1.1) Tax=RIFCSPHIGHO2_02_FULL_OD1_Magasanikbacteria_33_17_curated
superoxide dismutase n=1 Tax=unclassified candidate division EM 19 RepID=UPI0003B535FC
manganese/iron superoxide dismutase
rifcsphigho2_12_scaffold_8417_24
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

comp(16728..17372)
DNA (645bp) protein (215aa)
ArsR family transcription regulator n=1 Tax=Natronomonas moolapensis 8.8.11 RepID=M1XRD6_9EURY id=5102960 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
ArsR family transcription regulator
ArsR family transcription regulator Tax=CG_Woesearch_03
rifcsphigho2_12_scaffold_8417_25
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(17369..18004)
DNA (636bp) protein (212aa)
hypothetical protein
id=5102959 Tax=RBG_13_Pacearchaeota_36_9_curated
id=5102959 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsphigho2_12_scaffold_8417_26
RLO_OD1_41_13, Parcubacteria, Bacteria

Not on your lists

comp(18135..18713)
DNA (579bp) protein (193aa)
peroxiredoxin; K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15] Tax=RIFCSPLOWO2_12_FULL_OD1_41_13_curated
prx2-1; 2-cysteine peroxiredoxin (EC:1.11.1.15); K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15] id=120298 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
peroxiredoxin
rifcsphigho2_12_scaffold_8417_27
unknown

Not on your lists

18809..19462
DNA (654bp) protein (218aa)

This feature has no annotations

rifcsphigho2_12_scaffold_8417_28
unknown

Not on your lists

comp(19465..19761)
DNA (297bp) protein (99aa)

This feature has no annotations

rifcsphigho2_12_scaffold_8417_29
GWA2_Berkelbacteria_38_9, Berkelbacteria, Bacteria

Not on your lists


comp(19839..20336)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1XDF9_9BACT
Ham1 family protein {ECO:0000313|EMBL:KKQ90507.1}; TaxID=1618334 species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA2_38_9.;"
putative deoxyribonucleotide triphosphate pyrophosphatase
rifcsphigho2_12_scaffold_8417_30
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(20333..21802)
DNA (1470bp) protein (490aa)
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.37); K00088 IMP dehydrogenase [EC:1.1.1.205] id=5048276 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.37); K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=AR18
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.37)
Displaying items 1-30 of 43 in total

View Taxonomy