ggKbase home page

13_1_40cm_scaffold_203

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_203_1
unknown

Not on your lists

2..163
DNA (162bp) protein (54aa)

This feature has no annotations

13_1_40cm_scaffold_203_2
unknown

Not on your lists

501..1220
DNA (720bp) protein (240aa)

This feature has no annotations

13_1_40cm_scaffold_203_3
unknown

Not on your lists

comp(1743..1967)
DNA (225bp) protein (75aa)

This feature has no annotations

13_1_40cm_scaffold_203_4
unknown

Not on your lists

comp(2067..2414)
DNA (348bp) protein (116aa)

This feature has no annotations

13_1_40cm_scaffold_203_trna_2
unknown

Not on your lists

comp(2782..2880)
DNA (99bp)
transferRNA
13_1_40cm_scaffold_203_5

Not on your lists

comp(2925..3389)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI0003641852
Uncharacterized protein {ECO:0000313|EMBL:AIF04560.1}; TaxID=1456053 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_175_B11.;"
hypothetical protein
13_1_40cm_scaffold_203_6
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(3416..4414)
DNA (999bp) protein (333aa)
Probable tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01081}; tRNA pseud
Putative tRNA pseudouridine synthase B n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AR90_9ARCH
pseudouridylate synthase subunit TruB
13_1_40cm_scaffold_203_7

Not on your lists

comp(4386..4970)
DNA (585bp) protein (195aa)
Cytidylate kinase (Cmk) {ECO:0000313|EMBL:AIF16804.1}; EC=2.7.4.14 {ECO:0000313|EMBL:AIF16804.1};; TaxID=1456277 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine th
Putative uncharacterized protein n=2 Tax=environmental samples RepID=B3T8E5_9ARCH
cytidylate kinase
13_1_40cm_scaffold_203_8
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(4972..5607)
DNA (636bp) protein (212aa)
Membrane protein-like protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARQ3_9ARCH
Membrane protein-like protein {ECO:0000313|EMBL:CDI05244.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
13_1_40cm_scaffold_203_9
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(5579..6178)
DNA (600bp) protein (200aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] Tax=CSP1_1_Thaumarchaeota
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] id=14427113 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
AAA domain protein
13_1_40cm_scaffold_203_10

Not on your lists

comp(6156..7595)
DNA (1440bp) protein (480aa)
Protein translocase subunit SecY n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0B9N1_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKM27715.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
preprotein translocase subunit SecY
13_1_40cm_scaffold_203_11
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


comp(7592..8014)
DNA (423bp) protein (141aa)
Ribosomal protein L15 n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CUT2_9ARCH
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=1001994 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitro
50S ribosomal protein L15
13_1_40cm_scaffold_203_12
Candidatus Nitrosopelagicus brevis, Candidatus Nitrosopelagicus, Thaumarchaeota, Archaea

Not on your lists


comp(8016..8483)
DNA (468bp) protein (156aa)
rpl30p; 50S ribosomal protein L30P
50S ribosomal protein L30P {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00081760}; TaxID=1410606 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Candidatus Nitrosope
rpl30p; 50S ribosomal protein L30 id=14427116 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
13_1_40cm_scaffold_203_13
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


comp(8490..9119)
DNA (630bp) protein (210aa)
rps5p; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 id=14427117 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
rps5p; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=CSP1_1_Thaumarchaeota
rps; 30S ribosomal protein S5
13_1_40cm_scaffold_203_14
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists


comp(9116..9604)
DNA (489bp) protein (163aa)
Ribosomal protein L18P/L5E n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AS43_9ARCH
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archae
rpl18p; 50S ribosomal protein L18
13_1_40cm_scaffold_203_15
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(9653..10567)
DNA (915bp) protein (305aa)
ornithine carbamoyltransferase; K00611 ornithine carbamoyltransferase [EC:2.1.3.3] id=14427119 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ornithine carbamoyltransferase; K00611 ornithine carbamoyltransferase [EC:2.1.3.3] Tax=CSP1_1_Thaumarchaeota
argF; Ornithine carbamoyltransferase (EC:2.1.3.3)
13_1_40cm_scaffold_203_16
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(10564..11922)
DNA (1359bp) protein (453aa)
Signal recognition particle-docking protein FtsY n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AR81_9ARCH
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumar
signal recognition particle-docking protein FtsY
13_1_40cm_scaffold_203_17
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(11934..12356)
DNA (423bp) protein (141aa)
Prefoldin subunit alpha n=2 Tax=Nitrosopumilus RepID=K0B7R9_9ARCH
prefoldin subunit alpha
Prefoldin subunit alpha {ECO:0000256|HAMAP-Rule:MF_00308}; GimC subunit alpha {ECO:0000256|HAMAP-Rule:MF_00308}; TaxID=1229909 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Ni
13_1_40cm_scaffold_203_18
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(12480..13103)
DNA (624bp) protein (208aa)
superoxide dismutase (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] id=14427122 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
superoxide dismutase (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] Tax=CSP1_1_Thaumarchaeota
superoxide dismutase
13_1_40cm_scaffold_203_19
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

13179..15209
DNA (2031bp) protein (677aa)
peptidase S8/S53 subtilisin kexin sedolisin id=14427123 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
peptidase S8/S53 subtilisin kexin sedolisin Tax=CSP1_1_Thaumarchaeota
Peptidase S8/S53 subtilisin kexin sedolisin
13_1_40cm_scaffold_203_20
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(15214..16866)
DNA (1653bp) protein (551aa)
pckA; phosphoenolpyruvate carboxykinase (ATP) (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase (ATP) (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AR77_9ARCH
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:00
13_1_40cm_scaffold_203_21
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

16921..17322
DNA (402bp) protein (134aa)
rpl; 50S ribosomal protein L32e
50S ribosomal protein L32e {ECO:0000313|EMBL:AJW71466.1}; TaxID=1580092 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. N
50S ribosomal protein L32e id=14427125 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
13_1_40cm_scaffold_203_22

Not on your lists

17306..17755
DNA (450bp) protein (150aa)
Putative ribosomal protein L19e n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARP0_9ARCH
Ribosomal protein L19e (RP-L19e, RPL19) {ECO:0000313|EMBL:AIF16818.1}; TaxID=1456277 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_75_C09.;"
rpl19e; 50S ribosomal protein L19e
13_1_40cm_scaffold_203_23
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(17756..18019)
DNA (264bp) protein (88aa)
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CUS0_9ARCH
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000313|EMBL:EGP93116.1}; TaxID=1001994 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" sou
methylated-DNA--protein-cysteine methyltransferase
13_1_40cm_scaffold_203_24

Not on your lists

comp(18049..18825)
DNA (777bp) protein (259aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00562, ECO:0000256|SAAS:SAAS00160314}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00562, ECO:0000256|SAAS:SAAS00160312};; TaxID=1456401 species="Archa
dtdA; D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
hypothetical protein; K09716 hypothetical protein id=14427128 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
13_1_40cm_scaffold_203_25
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


19047..19502
DNA (456bp) protein (152aa)
NusG antitermination factor; K02601 transcriptional antiterminator NusG id=14427130 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
NusG antitermination factor; K02601 transcriptional antiterminator NusG Tax=CSP1_1_Thaumarchaeota
spt; Transcription elongation factor Spt5
13_1_40cm_scaffold_203_26
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


19541..20023
DNA (483bp) protein (161aa)
50S ribosomal protein L11 id=14427131 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
50S ribosomal protein L11 Tax=CSP1_1_Thaumarchaeota
50S ribosomal protein L11
13_1_40cm_scaffold_203_27
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(20033..20461)
DNA (429bp) protein (143aa)
AsnC family transcriptional regulator n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BAR7_9ARCH
AsnC family transcriptional regulator
AsnC family transcriptional regulator {ECO:0000313|EMBL:AFS82182.1}; TaxID=1229909 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopu
13_1_40cm_scaffold_203_28
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


20641..21297
DNA (657bp) protein (219aa)
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 id=14427133 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=CSP1_1_Thaumarchaeota
rpl; 50S ribosomal protein L1
13_1_40cm_scaffold_203_29
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists


21299..22165
DNA (867bp) protein (289aa)
Ribosomal protein L10 n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AR71_9ARCH
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00280}; Acidic ribosomal protein P0 homolog {ECO:0000256|HAMAP-Rule:MF_00280}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumar
rplJ; ribosomal protein L10
Displaying items 1-30 of 47 in total

View Taxonomy