ggKbase home page

13_1_40cm_2_scaffold_306

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_306_1

Not on your lists

comp(307..537)
DNA (231bp) protein (77aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL28605.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
AsnC family transcriptional regulator id=14427901 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
AsnC family transcriptional regulator
13_1_40cm_2_scaffold_306_2
unknown

Not on your lists

698..991
DNA (294bp) protein (98aa)

This feature has no annotations

13_1_40cm_2_scaffold_306_3
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(1082..2281)
DNA (1200bp) protein (400aa)
tRNA pseudouridine synthase TruD; K06176 tRNA pseudouridine13 synthase [EC:5.4.99.27] id=14427904 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
tRNA pseudouridine synthase TruD; K06176 tRNA pseudouridine13 synthase [EC:5.4.99.27] Tax=CSP1_1_Thaumarchaeota
tRNA pseudouridine synthase TruD
13_1_40cm_2_scaffold_306_4
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(2285..3844)
DNA (1560bp) protein (520aa)
hypothetical protein id=14427905 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
hypothetical protein Tax=CSP1_1_Thaumarchaeota
hypothetical protein
13_1_40cm_2_scaffold_306_5
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

3941..5035
DNA (1095bp) protein (365aa)
Putative transmembrane protein n=1 Tax=uncultured crenarchaeote RepID=Q8NKM7_9CREN
putative esterase of the alpha-beta hydrolase superfamily
Putative esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:AIF85472.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitroso
13_1_40cm_2_scaffold_306_6
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

5179..5475
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AUS4_9ARCH
putative RNA-binding protein, contains TRAM domain
Putative RNA-binding protein, contains TRAM domain {ECO:0000313|EMBL:AIF83749.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera
13_1_40cm_2_scaffold_306_7
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(5792..6340)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARN1_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05396.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
13_1_40cm_2_scaffold_306_8
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(6346..7695)
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AS82_9ARCH rbh
Uncharacterized protein {ECO:0000313|EMBL:CDI05395.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
13_1_40cm_2_scaffold_306_9
unknown

Not on your lists

comp(7908..8228)
DNA (321bp) protein (107aa)

This feature has no annotations

13_1_40cm_2_scaffold_306_10
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(8230..9042)
DNA (813bp) protein (271aa)
hypothetical protein id=14427757 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin2_Thaum organism_group=Archaeon
hypothetical protein Tax=CSP1_1_Thaumarchaeota
hypothetical protein
13_1_40cm_2_scaffold_306_11
RBG_19FT_COMBO_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(9084..10364)
DNA (1281bp) protein (427aa)
Sodium/proton antiporter, CPA1 family n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BNM4_9EURY
Na+/H+ antiporter; K03316 monovalent cation:H+ antiporter, CPA1 family Tax=RBG_19FT_COMBO_Chloroflexi_50_10_curated
Na/H antiporter
13_1_40cm_2_scaffold_306_12
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(10519..11019)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A3A7_NITMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX12536.1}; TaxID=436308 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SC
13_1_40cm_2_scaffold_306_13
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(11065..13551)
DNA (2487bp) protein (829aa)
peptidase M1 membrane alanine aminopeptidase id=14428343 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
peptidase M1 membrane alanine aminopeptidase Tax=CSP1_1_Thaumarchaeota
peptidase family M1
13_1_40cm_2_scaffold_306_14
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(13818..14309)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B3M9_9ARCH
DedA family protein
DedA family protein {ECO:0000313|EMBL:AIC16209.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera vienn
13_1_40cm_2_scaffold_306_15

Not on your lists

comp(14325..14558)
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL11798.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein id=14427880 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
13_1_40cm_2_scaffold_306_16
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

14715..15098
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AV04_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI06308.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
13_1_40cm_2_scaffold_306_17
unknown

Not on your lists

15138..15476
DNA (339bp) protein (113aa)

This feature has no annotations

13_1_40cm_2_scaffold_306_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(15478..15891)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE38_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59621.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera
13_1_40cm_2_scaffold_306_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

16308..16814
DNA (507bp) protein (169aa)
Putative thioesterase superfamily protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG13_NITGG
thioesterase superfamily protein
Putative thioesterase superfamily protein {ECO:0000313|EMBL:AFU58725.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" sourc
13_1_40cm_2_scaffold_306_20
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(16818..17588)
DNA (771bp) protein (257aa)
exported protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:AIC17097.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera v
13_1_40cm_2_scaffold_306_21
unknown

Not on your lists

17651..17830
DNA (180bp) protein (60aa)

This feature has no annotations

13_1_40cm_2_scaffold_306_22
unknown

Not on your lists

17894..18010
DNA (117bp) protein (39aa)

This feature has no annotations

13_1_40cm_2_scaffold_306_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(18012..18266)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILI2_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60438.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera
Displaying 23 items

View Taxonomy