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13_1_40CM_2_Archaea_39_4

13_1_40CM_2_Thaumarchaeota_38_5

In projects: 13_1_40CM_2 | angelo_ncbi_2016 | archaea_ggkbase | meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Thaumarchaeota → TACK → Archaea

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 5.39 Longest contig: 40.96 Kbp Bin length: 901.55 Kbp GC content: 38.28 %

Contigs count: 216 Features count: 1108 rRNAs count: 0 tRNAs count: 14

Genome completeness

partial RP 7 / 55 MC: 1 BSCG 3 / 51 ASCG 18 / 38 MC: 1

Displaying items 201-216 of 216 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_2_scaffold_430033 Species: marine sediment metagenome (50%)	2	1357 bp	42.08	7.18	100.81
13_1_40cm_2_scaffold_26037 Domain: Archaea (50%)	6	4240 bp	41.82	7.22	57.95
13_1_40cm_2_scaffold_10880 Species: CSP1_1_Thaumarchaeota (66.67%)	6	5069 bp	36.59	7.25	95.29
13_1_40cm_2_scaffold_34 Order: Nitrosopumilales (55.1%)	49	40962 bp	38.72	7.33	93.80
13_1_40cm_2_scaffold_164753 Species: CSP1_1_Thaumarchaeota (50%)	4	2468 bp	38.53	7.35	82.29
13_1_40cm_2_scaffold_107910 Phylum: Thaumarchaeota (60%)	5	1836 bp	37.91	7.43	93.30
13_1_40cm_2_scaffold_5996 Order: Nitrosopumilales (63.16%)	19	14712 bp	37.14	7.43	93.94
13_1_40cm_2_scaffold_63863 Phylum: Thaumarchaeota (50%)	4	2360 bp	36.40	7.50	79.87
13_1_40cm_2_scaffold_794 Phylum: Thaumarchaeota (80.77%)	26	26391 bp	37.10	7.51	92.83
13_1_40cm_2_scaffold_4461 Order: Nitrosopumilales (50%)	24	18416 bp	37.07	7.67	92.17
13_1_40cm_2_scaffold_186821 Species: CSP1_1_Thaumarchaeota (100%)	1	1402 bp	40.23	8.02	99.93
13_1_40cm_2_scaffold_2214 Phylum: Thaumarchaeota (53.85%)	13	10814 bp	38.41	8.10	79.09
13_1_40cm_2_scaffold_199 Order: Nitrosopumilales (58.33%)	36	25176 bp	37.57	8.17	89.71
13_1_40cm_2_scaffold_428293 Domain: Archaea (66.67%)	3	1453 bp	42.74	8.23	90.64
13_1_40cm_2_scaffold_230 Order: Nitrosopumilales (55%)	20	20096 bp	37.26	8.34	82.29
13_1_40cm_2_scaffold_446851 Phylum: Thaumarchaeota (50%)	6	2348 bp	39.78	8.37	69.51

Displaying items 201-216 of 216 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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