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QH_3_Halobacteriales_64_13

In projects: QH_3  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: QH_3_UNK

Properties

Avg. coverage: 13.32 Longest contig: 60.10 Kbp Bin length: 3.30 Mbp GC content: 64.28 %
Contigs count: 322 Features count: 3623 rRNAs count: 1 tRNAs count: 34

Genome completeness

near complete RP 33 / 55 MC: 4 BSCG 28 / 51 MC: 2 ASCG 36 / 38 MC: 3
Displaying items 51-100 of 322 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_3_scaffold_576
Genus: Halococcus (50%)
18 10272 bp 65.19 13.50 79.73
qh_3_scaffold_1218
Order: Halobacteriales (50%)
18 20494 bp 65.32 14.08 80.85
qh_3_scaffold_997
Order: Halobacteriales (77.78%)
18 20535 bp 64.30 13.37 80.25
qh_3_scaffold_1068
Order: Halobacteriales (66.67%)
18 14011 bp 65.08 13.88 78.58
qh_3_scaffold_933
Order: Halobacteriales (50%)
18 16704 bp 65.40 13.22 82.63
qh_3_scaffold_888
Class: Halobacteria (58.82%)
17 17552 bp 64.63 12.96 82.83
qh_3_scaffold_380
Order: Halobacteriales (52.94%)
17 12211 bp 66.75 14.59 85.79
qh_3_scaffold_359
Class: Halobacteria (94.12%)
17 12359 bp 65.16 12.29 83.07
qh_3_scaffold_314
Genus: Halococcus (68.75%)
16 16804 bp 65.53 14.19 81.91
qh_3_scaffold_1099
Order: Halobacteriales (62.5%)
16 16668 bp 63.47 13.78 87.37
qh_3_scaffold_345
Class: Halobacteria (75%)
16 11609 bp 62.99 14.48 77.76
qh_3_scaffold_221
Order: Halobacteriales (50%)
16 19100 bp 65.46 12.24 90.30
qh_3_scaffold_1063
Order: Halobacteriales (62.5%)
16 14359 bp 64.22 12.70 76.38
qh_3_scaffold_611
Order: Halobacteriales (50%)
16 14552 bp 64.88 14.64 75.54
qh_3_scaffold_658
Class: Halobacteria (62.5%)
16 9356 bp 63.53 15.56 67.46
qh_3_scaffold_1749
Class: Halobacteria (60%)
15 11156 bp 61.89 12.65 80.32
qh_3_scaffold_1284
Class: Halobacteria (66.67%)
15 10854 bp 64.97 14.09 81.92
qh_3_scaffold_1186
Class: Halobacteria (80%)
15 10225 bp 63.21 11.77 71.82
qh_3_scaffold_737
Class: Halobacteria (86.67%)
15 13874 bp 63.91 13.90 78.88
qh_3_scaffold_625
Order: Halobacteriales (53.33%)
15 14251 bp 65.78 13.87 86.29
qh_3_scaffold_945
Order: Halobacteriales (60%)
15 6784 bp 66.19 13.66 96.40
qh_3_scaffold_258
Class: Halobacteria (80%)
15 15827 bp 65.32 12.85 79.55
qh_3_scaffold_1340
Order: Halobacteriales (66.67%)
15 10422 bp 61.79 13.59 79.56
qh_3_scaffold_880
Order: Halobacteriales (80%)
15 13235 bp 64.10 14.33 84.62
qh_3_scaffold_426
Class: Halobacteria (60%)
15 12286 bp 66.50 14.47 86.17
qh_3_scaffold_1157
Class: Halobacteria (66.67%)
15 12283 bp 65.57 12.72 75.10
qh_3_scaffold_2461
Order: Halobacteriales (50%)
14 8253 bp 63.37 12.07 79.86
qh_3_scaffold_1379
Order: Halobacteriales (57.14%)
14 11435 bp 64.81 14.77 82.30
qh_3_scaffold_294
Order: Halobacteriales (71.43%)
14 14913 bp 63.09 13.31 87.15
qh_3_scaffold_1770
Order: Halobacteriales (57.14%)
14 9941 bp 62.68 12.93 67.93
qh_3_scaffold_366
Order: Halobacteriales (50%)
14 11167 bp 64.07 13.42 84.70
qh_3_scaffold_482
Order: Natrialbales (71.43%)
14 15826 bp 65.14 12.86 75.41
qh_3_scaffold_254
Class: Halobacteria (78.57%)
14 13374 bp 56.05 13.83 71.58
qh_3_scaffold_2160
Class: Halobacteria (64.29%)
14 11828 bp 65.73 13.48 82.38
qh_3_scaffold_1024
Order: Halobacteriales (64.29%)
14 13439 bp 64.68 13.19 77.86
qh_3_scaffold_632
Genus: Halococcus (78.57%)
14 11556 bp 64.94 15.32 90.78
qh_3_scaffold_454
Order: Halobacteriales (53.85%)
13 10066 bp 62.82 12.79 81.15
qh_3_scaffold_1285 13 10170 bp 64.77 12.98 70.62
qh_3_scaffold_618
Genus: Halococcus (61.54%)
13 10929 bp 64.59 13.93 78.89
qh_3_scaffold_412
Class: Halobacteria (92.31%)
13 14112 bp 57.78 16.13 84.63
qh_3_scaffold_554
Order: Halobacteriales (61.54%)
13 12313 bp 66.39 13.28 82.21
qh_3_scaffold_196
Order: Halobacteriales (53.85%)
13 12435 bp 62.03 14.34 85.53
qh_3_scaffold_1538
Genus: Halococcus (53.85%)
13 8917 bp 62.36 13.50 78.22
qh_3_scaffold_1549
Class: Halobacteria (92.31%)
13 13821 bp 63.71 13.26 72.37
qh_3_scaffold_722
Class: Halobacteria (76.92%)
13 10584 bp 62.87 13.65 90.42
qh_3_scaffold_1159
Domain: Archaea (61.54%)
13 5820 bp 61.51 15.12 82.84
qh_3_scaffold_750
Class: Halobacteria (61.54%)
13 7769 bp 58.30 11.25 77.42
qh_3_scaffold_1474
Class: Halobacteria (84.62%)
13 9339 bp 64.27 12.27 76.16
qh_3_scaffold_506
Order: Halobacteriales (50%)
12 10767 bp 67.65 13.84 86.04
qh_3_scaffold_803
Order: Halobacteriales (66.67%)
12 10328 bp 65.94 13.67 87.72
Displaying items 51-100 of 322 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.