ggKbase home page

qs_4_scaffold_53

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_4_scaffold_53_1
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2..148
DNA (147bp) protein (49aa)
cas3B; CRISPR-associated helicase Cas3 (EC:3.6.4.-)
CRISPR-associated nuclease/helicase Cas3 {ECO:0000313|EMBL:CCC40226.1}; EC=3.1.-.- {ECO:0000313|EMBL:CCC40226.1};; EC=3.6.4.- {ECO:0000313|EMBL:CCC40226.1};; TaxID=768065 species="Archaea; Euryarchaeo
CRISPR-associated helicase Cas3 n=1 Tax=Haloquadratum walsbyi (strain DSM 16854 / JCM 12705 / C23) RepID=G0LIH4_HALWC
qs_4_scaffold_53_2
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

145..693
DNA (549bp) protein (183aa)
CRISPR-associated protein Cas4 n=2 Tax=Haloarcula hispanica RepID=G0HZP3_HALHT
CRISPR-associated protein Cas4
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:AHB67950.1}; TaxID=1417673 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula hispanica
qs_4_scaffold_53_3
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

696..1691
DNA (996bp) protein (332aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halo
CRISPR-associated endonuclease Cas1 n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KV06_HALAR
CRISPR-associated protein Cas1 rbh
qs_4_scaffold_53_4
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1693..1953
DNA (261bp) protein (87aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales;
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KV82_HALAR
CRISPR-associated protein Cas2
qs_4_scaffold_53_5
unknown

Not on your lists

comp(2256..2351)
DNA (96bp) protein (32aa)

This feature has no annotations

qs_4_scaffold_53_6
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4886..5173)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Halogranum salarium B-1 RepID=J3JDI3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJN57514.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
hypothetical protein
qs_4_scaffold_53_7
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5292..5546
DNA (255bp) protein (85aa)
manganese containing catalase (EC:1.11.1.6)
Manganese containing catalase n=1 Tax=Halogranum salarium B-1 RepID=J3EWA6_9EURY
Manganese containing catalase {ECO:0000313|EMBL:EJN59117.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
qs_4_scaffold_53_8
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5901..6161)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CNL2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ24855.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
hypothetical protein
qs_4_scaffold_53_9
unknown

Not on your lists

6345..6542
DNA (198bp) protein (66aa)

This feature has no annotations

qs_4_scaffold_53_10
unknown

Not on your lists

6782..6997
DNA (216bp) protein (72aa)

This feature has no annotations

qs_4_scaffold_53_11
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6978..8312
DNA (1335bp) protein (445aa)
menF; menaquinone-specific isochorismate synthase (EC:5.4.4.2)
Menaquinone-specific isochorismate synthase n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KT34_9EURY
Menaquinone-specific isochorismate synthase {ECO:0000313|EMBL:EMA22900.1}; TaxID=1227452 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarc
qs_4_scaffold_53_12
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8309..10084
DNA (1776bp) protein (592aa)
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase {ECO:0000256|HAMAP-Rule:MF_01659}; Short=SEPHCHC synthase {ECO:0000256|HAMAP-Rule:MF_01659};; EC=2.2.1.9 {ECO:0000256|HAMAP-Rule
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0IYH4_HALVA
menD; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
qs_4_scaffold_53_13
Haloarcula sp. CBA1115, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10085..10963)
DNA (879bp) protein (293aa)
Chaperone protein DnaJ n=2 Tax=Haloarcula hispanica RepID=G0HRA2_HALHT
dnaJ4; chaperone protein DnaJ
Molecular chaperone DnaJ {ECO:0000313|EMBL:AJF27017.1}; TaxID=1592728 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula sp. CBA1115.;"
qs_4_scaffold_53_14
Haloarcula marismortui, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11185..12144
DNA (960bp) protein (320aa)
ech1; naphthoate synthase (EC:4.1.3.36) rbh
1,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934}; Short=DHNA-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934};; EC=4.1.3.36 {ECO:0000256|HAMAP-Rule:MF_01934};; TaxID=272569 speci
Enoyl-CoA hydratase n=2 Tax=Haloarcula RepID=Q5V3S9_HALMA
qs_4_scaffold_53_15
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12231..14015)
DNA (1785bp) protein (595aa)
sensor box histidine kinase (EC:2.7.13.3)
Sensor box histidine kinase {ECO:0000313|EMBL:CCQ36406.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CCQ36406.1};; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Na
Sensor box histidine kinase n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XQJ4_NATM8
qs_4_scaffold_53_16
Haloferax denitrificans, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14024..15478)
DNA (1455bp) protein (485aa)
KaiC-type circadian regulator Circ3 n=1 Tax=Haloferax denitrificans ATCC 35960 RepID=M0IZT5_9EURY
KaiC-type circadian regulator Circ3 {ECO:0000313|EMBL:EMA01593.1}; TaxID=662478 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax denitrifica
cirC; KaiC-type circadian regulator Circ3
qs_4_scaffold_53_17
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

15614..16567
DNA (954bp) protein (318aa)
1,4-dihydroxy-2-naphthoate octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937}; Short=DHNA-octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937};; EC=2.5.1.74 {ECO:0000256|HAMAP-Rule:MF_01937};;
1,4-dihydroxy-2-naphthoate octaprenyltransferase n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KNY0_9EURY
1,4-dihydroxy-2-naphthoate prenyltransferase
qs_4_scaffold_53_18
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16564..17610
DNA (1047bp) protein (349aa)
o-succinylbenzoate synthase {ECO:0000256|HAMAP-Rule:MF_00470}; Short=OSB synthase {ECO:0000256|HAMAP-Rule:MF_00470};; Short=OSBS {ECO:0000256|HAMAP-Rule:MF_00470};; EC=4.2.1.113 {ECO:0000256|HAMAP-Rul
Chloromuconate cycloisomerase n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0J1L1_HALVA
chloromuconate cycloisomerase
qs_4_scaffold_53_19
Haloarcula californiae, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

17603..19087
DNA (1485bp) protein (495aa)
menE; O-succinylbenzoic acid-CoA ligase (EC:6.2.1.26) rbh
O-succinylbenzoate--CoA ligase n=1 Tax=Haloarcula californiae ATCC 33799 RepID=M0JWK1_9EURY
O-succinylbenzoate--CoA ligase {ECO:0000313|EMBL:EMA11995.1}; TaxID=662475 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula california
qs_4_scaffold_53_20
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19130..19867
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KRR1_9EURY
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EMA22894.1}; TaxID=1227452 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula amylolytica JCM
qs_4_scaffold_53_21
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19893..20243
DNA (351bp) protein (117aa)
Transcription repressor CinR n=9 Tax=Haloarcula RepID=G0HRA5_HALHT
transcription factor
Transcription repressor CinR {ECO:0000313|EMBL:EMA24545.1}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentinens
qs_4_scaffold_53_22
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20278..20673)
DNA (396bp) protein (132aa)
Uncharacterized protein n=2 Tax=Haloarcula hispanica RepID=G0HRB2_HALHT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEM57097.1}; TaxID=634497 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula hispanica (strain
qs_4_scaffold_53_23
Haloarcula sinaiiensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20714..21001)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Haloarcula sinaiiensis ATCC 33800 RepID=M0JX87_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EMA13571.1}; TaxID=662476 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula sinaiiensis ATCC
qs_4_scaffold_53_24
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20998..22002)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Haloarcula hispanica N601 RepID=V5TKM0_HALHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHB65886.1}; TaxID=1417673 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula hispanica N601.;
qs_4_scaffold_53_25
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22043..22798)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KWF1_HALAR
Uncharacterized protein {ECO:0000313|EMBL:EMA24534.1}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentinensis DS
hypothetical protein
qs_4_scaffold_53_26
unknown

Not on your lists

comp(22853..23173)
DNA (321bp) protein (107aa)

This feature has no annotations

qs_4_scaffold_53_27
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(23223..24146)
DNA (924bp) protein (308aa)
UDP-glucose 4-epimerase n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0LD32_HALJP
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EMA30354.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica DSM 613
UDP-glucose 4-epimerase
qs_4_scaffold_53_28
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24234..24557
DNA (324bp) protein (108aa)
DSBA oxidoreductase {ECO:0000313|EMBL:EMA30353.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica DSM 6131.;"
qs_4_scaffold_53_29
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24554..25105
DNA (552bp) protein (184aa)
tRNA (cytidine(56)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00077}; EC=2.1.1.206 {ECO:0000256|HAMAP-Rule:MF_00077};; tRNA ribose 2'-O-methyltransferase aTrm56 {ECO:0000256|HAMAP-Rule:MF_0007
tRNA (cytidine(56)-2'-O)-methyltransferase n=2 Tax=Haloarcula hispanica RepID=G0HRB9_HALHT
tRNA 2'-O-methylase
qs_4_scaffold_53_30
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

25276..25800
DNA (525bp) protein (175aa)
Transcription factor E n=4 Tax=Haloarcula RepID=G0HRC3_HALHT
transcription factor
Transcription factor E {ECO:0000256|HAMAP-Rule:MF_01909, ECO:0000256|SAAS:SAAS00008967}; Short=TFE {ECO:0000256|HAMAP-Rule:MF_01909};; TFIIE subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01909}; Tr
Displaying items 1-30 of 104 in total

View Taxonomy