ggKbase home page

qs_4_scaffold_276

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_4_scaffold_276_1
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3..293
DNA (291bp) protein (97aa)
UspA domain protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CLH4_9EURY
Universal stress protein {ECO:0000313|EMBL:KKF39856.1}; TaxID=2248 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum saccharovorum.;"
UspA domain protein
qs_4_scaffold_276_2
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

355..726
DNA (372bp) protein (124aa)
Cationic amino acid transporter n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0J0G7_HALVA
cat; cationic amino acid transporter
Cationic amino acid transporter {ECO:0000313|EMBL:EMA01848.1}; TaxID=662477 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula vallismor
qs_4_scaffold_276_3
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

677..1024
DNA (348bp) protein (116aa)
Cationic amino acid transporter n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0J0G7_HALVA
Cationic amino acid transporter {ECO:0000313|EMBL:EMA01848.1}; TaxID=662477 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula vallismor
amino acid transporter
qs_4_scaffold_276_4
Halorubrum kocurii, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1474..2157
DNA (684bp) protein (228aa)
Cationic amino acid transporter n=1 Tax=Halorubrum kocurii JCM 14978 RepID=M0NHA9_9EURY
Cationic amino acid transporter {ECO:0000313|EMBL:EMA56963.1}; TaxID=1230456 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum kocurii JCM
amino acid transporter
qs_4_scaffold_276_5
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2205..4001
DNA (1797bp) protein (599aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4GSL1_9EURY
Multi-sensor signal transduction histidine kinase {ECO:0000313|EMBL:ESP88081.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;"
multi-sensor signal transduction histidine kinase
qs_4_scaffold_276_6
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4411..5382)
DNA (972bp) protein (324aa)
mhpC; 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase (EC:3.7.1.-)
2-hydroxy-6-ketonona-24-dienedioic acid hydrolase n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0LKR8_HALJP
2-hydroxy-6-ketonona-24-dienedioic acid hydrolase {ECO:0000313|EMBL:EMA33673.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="H
qs_4_scaffold_276_trna_2
unknown

Not on your lists

comp(5667..5739)
DNA (73bp)
transferRNA
qs_4_scaffold_276_7
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5906..6496)
DNA (591bp) protein (197aa)
Ferredoxin 2Fe-2S n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MM78_9EURY
Ferredoxin 2Fe-2S {ECO:0000313|EMBL:EMA46781.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus DSM 53
ferredoxin
qs_4_scaffold_276_8
Halostagnicola sp. A56, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6637..6897)
DNA (261bp) protein (87aa)
Biotin/lipoyl attachment domain-containing protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CTX4_9EURY
Biotin attachment protein {ECO:0000313|EMBL:KDE57152.1}; TaxID=1495067 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.;" source="Halostagnicola sp. A56.;"
biotin attachment protein
qs_4_scaffold_276_9
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6894..7916)
DNA (1023bp) protein (341aa)
Transketolase n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CPY9_9EURY
Transketolase {ECO:0000313|EMBL:ELZ25330.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 13563.;"
pyruvate dehydrogenase subunit beta
qs_4_scaffold_276_10
Haloferax sp. Arc-Hr, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7913..8998)
DNA (1086bp) protein (362aa)
oadhA2; 2-oxoacid dehydrogenase E1 component subunit alpha (EC:1.2.4.-) rbh
2-oxoacid dehydrogenase E1 component subunit alpha n=1 Tax=Haloferax larsenii JCM 13917 RepID=M0H1L9_9EURY
Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha {ECO:0000313|EMBL:CQR49393.1}; TaxID=1476858 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;
qs_4_scaffold_276_11
Natrinema pellirubrum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9219..10115)
DNA (897bp) protein (299aa)
6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Natrinema pellirubrum (strain DSM 15624 / JCM 10476 / NCIMB 786) RepID=L0JFY9_NATP1
6-phosphogluconate dehydrogenase, decarboxylating
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000313|EMBL:AGB30440.1}; 6-phosphogluconate dehydrogenase-like protein {ECO:0000313|EMBL:ELY79754.1}; TaxID=797303 species="Archaea; Euryarchaeo
qs_4_scaffold_276_12
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10200..11117)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=haloarchaeon 3A1_DGR RepID=T0SNT7_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA34770.1}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma lacisalsi AJ5.;"
hypothetical protein
qs_4_scaffold_276_13
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


11387..14011
DNA (2625bp) protein (875aa)
valS; valine--tRNA ligase (EC:6.1.1.9)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02005}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02005};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02005}; TaxID=268739 species="Archaea; Euryarchae
Valine--tRNA ligase n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XTU5_NATM8
qs_4_scaffold_276_14
Natronolimnobius innermongolicus, Natronolimnobius, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14071..15177
DNA (1107bp) protein (369aa)
Peptidase M29 aminopeptidase II n=1 Tax=Natronolimnobius innermongolicus JCM 12255 RepID=L9X5U7_9EURY
Peptidase M29 aminopeptidase II {ECO:0000313|EMBL:ELY57050.1}; TaxID=1227499 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronolimnobius.;" source="Natronolimnobius in
peptidase M29 aminopeptidase II
qs_4_scaffold_276_15
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

15352..15786
DNA (435bp) protein (145aa)
Deoxycytidine triphosphate deaminase n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DH84_9EURY
Deoxycytidine triphosphate deaminase {ECO:0000313|EMBL:ELZ34871.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometric
dCTP deaminase
qs_4_scaffold_276_16
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16082..18229)
DNA (2148bp) protein (716aa)
Elongation factor 2 n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PIB4_9EURY
translation elongation factor 2
Elongation factor 2 {ECO:0000256|HAMAP-Rule:MF_00054, ECO:0000256|SAAS:SAAS00088569}; Short=EF-2 {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Haloba
qs_4_scaffold_276_17
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18409..19212)
DNA (804bp) protein (268aa)
Heat shock protein DnaJ domain protein n=1 Tax=Halorubrum saccharovorum DSM 1137 RepID=M0DNP0_9EURY
Heat shock protein DnaJ domain protein {ECO:0000313|EMBL:ELZ37080.1}; TaxID=1227484 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum sacch
dnaJ; chaperone protein dnaJ
qs_4_scaffold_276_18
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19256..20002
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MG25_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA43375.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
qs_4_scaffold_276_19
unknown

Not on your lists

comp(20055..20357)
DNA (303bp) protein (101aa)

This feature has no annotations

qs_4_scaffold_276_20
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(20584..21195)
DNA (612bp) protein (204aa)
30S ribosomal protein S7 n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J904_HALJB
30S ribosomal protein S7P
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480, ECO:0000256|RuleBase:RU003621}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccu
qs_4_scaffold_276_21
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(21192..21620)
DNA (429bp) protein (143aa)
30S ribosomal protein S12 n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XU20_NATM8
rps12; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU004490}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.
qs_4_scaffold_276_22
unknown

Not on your lists

21760..22020
DNA (261bp) protein (87aa)

This feature has no annotations

qs_4_scaffold_276_23
Natronococcus occultus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22056..22475)
DNA (420bp) protein (140aa)
NusA family KH domain protein n=1 Tax=Natronococcus occultus SP4 RepID=L0JTK0_9EURY
NusA family KH domain protein
Probable transcription termination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=694430 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Nat
qs_4_scaffold_276_24
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22483..23682)
DNA (1200bp) protein (400aa)
rpoA''; DNA-directed RNA polymerase subunit A'' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit A'' {ECO:0000256|HAMAP-Rule:MF_00411}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00411};; TaxID=634497 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; H
DNA-directed RNA polymerase subunit A'' n=2 Tax=Haloarcula hispanica RepID=G0HSR2_HALHT
qs_4_scaffold_276_25
Haloarcula marismortui, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(23682..26603)
DNA (2922bp) protein (974aa)
rpoA; DNA-directed RNA polymerase subunit A' (EC:2.7.7.6)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; TaxID=272569 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae;
DNA-directed RNA polymerase n=1 Tax=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) RepID=Q5UZR4_HALMA
qs_4_scaffold_276_26
Halomarina oriensis, Halomarina, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(26605..28431)
DNA (1827bp) protein (609aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU000431}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU000431};; TaxID=671145 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae;
DNA-directed RNA polymerase subunit B' (EC:2.7.7.6)
DNA-directed RNA polymerase n=1 Tax=Haloarcula quadrata RepID=C5NSB7_9EURY
qs_4_scaffold_276_27
Halorubrum distributum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(28433..29998)
DNA (1566bp) protein (522aa)
DNA-directed RNA polymerase subunit B {ECO:0000313|EMBL:ELZ50928.1}; EC=2.7.7.6 {ECO:0000313|EMBL:ELZ50928.1};; TaxID=1227468 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacace
DNA-directed RNA polymerase subunit B'' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit B n=4 Tax=Halorubrum RepID=M0D7L7_9EURY
qs_4_scaffold_276_28
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(29995..30228)
DNA (234bp) protein (78aa)
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; TaxID=797210 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natria
DNA-directed RNA polymerase subunit H n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8D4N0_HALXS
DNA-directed RNA polymerase subunit H
qs_4_scaffold_276_trna_1
unknown

Not on your lists

30462..30534
DNA (73bp)
transferRNA
Displaying items 1-30 of 48 in total

View Taxonomy