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qs_4_scaffold_249

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_4_scaffold_249_1
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(517..942)
DNA (426bp) protein (142aa)
NifU-like protein n=4 Tax=Haloarcula RepID=Q5UY39_HALMA
nifU1; NifU-like protein
NifU-like protein {ECO:0000313|EMBL:EMA22491.1}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentinensis DSM 1228
qs_4_scaffold_249_trna_1
unknown

Not on your lists

1116..1221
DNA (106bp)
transferRNA
qs_4_scaffold_249_2

Not on your lists

comp(1346..2293)
DNA (948bp) protein (316aa)
serA2; phosphoglycerate dehydrogenase (EC:1.1.1.95)
Phosphoglycerate dehydrogenase related dehydrogenase n=1 Tax=uncultured archaeon A07HR67 RepID=V4X8P9_9ARCH
Phosphoglycerate dehydrogenase related dehydrogenase {ECO:0000313|EMBL:ESS04124.1}; TaxID=1412871 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR67.;"
qs_4_scaffold_249_3
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2298..2858)
DNA (561bp) protein (187aa)
TATA-box-binding protein n=1 Tax=halophilic archaeon J07HX64 RepID=U1PDU1_9EURY
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rul
TATA-box binding family protein
qs_4_scaffold_249_4
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3041..4060
DNA (1020bp) protein (340aa)
RNA methylase; K07446 tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213] id=24644288 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
N2-methylguanosine tRNA methyltransferase {ECO:0000313|EMBL:ERH08522.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
RNA methylase
qs_4_scaffold_249_5
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(4331..4912)
DNA (582bp) protein (194aa)
UPF0218 protein C443_12281 n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KLJ4_HALAR
UPF0218 protein C443_12281 {ECO:0000256|HAMAP-Rule:MF_00590}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentine
hypothetical protein
qs_4_scaffold_249_6
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4915..5112)
DNA (198bp) protein (66aa)
rpoE2; DNA-directed RNA polymerase subunit E'' (EC:2.7.7.6)
Transcription elongation factor Spt4 n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D171_9EURY
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimple
qs_4_scaffold_249_7
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(5112..5690)
DNA (579bp) protein (193aa)
DNA-directed RNA polymerase n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NZV1_HALMD
DNA-directed RNA polymerase subunit E'
DNA-directed RNA polymerase {ECO:0000313|EMBL:ACV46859.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukohat
qs_4_scaffold_249_8
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(5708..6088)
DNA (381bp) protein (127aa)
SSU processome protein Utp24 n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0LMU3_HALJP
SSU processome protein Utp24 {ECO:0000313|EMBL:EMA34826.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica DS
nucleotide binding protein PINc
qs_4_scaffold_249_9
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6085..7446)
DNA (1362bp) protein (454aa)
Translation initiation factor 2 subunit gamma n=1 Tax=halophilic archaeon J07HX64 RepID=U1QWY0_9EURY
Translation initiation factor 2 subunit gamma {ECO:0000256|HAMAP-Rule:MF_00119}; aIF2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; eIF-2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; TaxID=1085028 species="Arc
translation initiation factor 2 subunit gamma
qs_4_scaffold_249_10

Not on your lists

7564..9270
DNA (1707bp) protein (569aa)
Signal transduction histidine kinase n=1 Tax=uncultured archaeon A07HN63 RepID=V4Y067_9ARCH
Signal transduction histidine kinase {ECO:0000313|EMBL:ESS08023.1}; TaxID=1412873 species="Archaea; environmental samples.;" source="uncultured archaeon A07HN63.;"
HTR-like protein
qs_4_scaffold_249_11
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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9392..10150
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MFE4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA44068.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
qs_4_scaffold_249_12
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10384..11346
DNA (963bp) protein (321aa)
beta-lactamase id=24649679 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
Zn-dependent hydrolase {ECO:0000313|EMBL:ERH10766.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
metallo-beta-lactamase
qs_4_scaffold_249_13
Natrinema versiforme, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(11370..12275)
DNA (906bp) protein (302aa)
Phosphate transport system regulator related protein n=1 Tax=Natrinema versiforme JCM 10478 RepID=L9XP82_9EURY
Phosphate transport system regulator related protein {ECO:0000313|EMBL:ELY63241.1}; TaxID=1227496 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natri
hypothetical protein
qs_4_scaffold_249_14
Natrinema versiforme, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12467..13483
DNA (1017bp) protein (339aa)
Transcriptional regulator n=1 Tax=Natrinema versiforme JCM 10478 RepID=L9XNB3_9EURY
Transcriptional regulator {ECO:0000313|EMBL:ELY63240.1}; TaxID=1227496 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema versiforme JCM 10478.;
phoU2; transcription regulator (homolog to phosphate uptake regulator)
qs_4_scaffold_249_15

Not on your lists

13643..14683
DNA (1041bp) protein (347aa)
adh4; alcohol dehydrogenase (EC:1.1.1.1)
Zn-dependent alcohol dehydrogenase n=1 Tax=uncultured archaeon A07HN63 RepID=V4Y1U5_9ARCH
Zn-dependent alcohol dehydrogenase {ECO:0000313|EMBL:ESS08623.1}; TaxID=1412873 species="Archaea; environmental samples.;" source="uncultured archaeon A07HN63.;"
qs_4_scaffold_249_16
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14809..16377
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CP80_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ25060.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
hypothetical protein
qs_4_scaffold_249_17

Not on your lists

comp(16413..16853)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=uncultured archaeon A07HR67 RepID=V4XZK9_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:ESS04077.1}; TaxID=1412871 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR67.;"
hypothetical protein
qs_4_scaffold_249_18
halophilic archaeon J07HX5, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16984..18495
DNA (1512bp) protein (504aa)
Putative efflux protein, MATE family n=1 Tax=halophilic archaeon J07HX5 RepID=U1MZT7_9EURY
Putative efflux protein, MATE family {ECO:0000313|EMBL:ERG89573.1}; TaxID=1325472 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX5.;"
putative efflux protein, MATE family
qs_4_scaffold_249_19
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18583..19392)
DNA (810bp) protein (270aa)
cheR; chemotaxis protein CheR (EC:2.1.1.80)
Chemotaxis protein CheR n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KH10_HALAR
Chemotaxis protein CheR {ECO:0000313|EMBL:EMA20173.1}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentinensis DS
qs_4_scaffold_249_20
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19389..21437)
DNA (2049bp) protein (683aa)
Chemotaxis protein CheA n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CTK4_9EURY
Chemotaxis protein CheA {ECO:0000313|EMBL:ELZ25747.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
CheA signal transduction histidine kinase
qs_4_scaffold_249_21
Halorhabdus utahensis, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(21621..22763)
DNA (1143bp) protein (381aa)
response regulator receiver modulated CheB methylesterase (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=519442 species="Archaea; Euryarchaeota; Halobact
chemotaxis protein n=1 Tax=Halomicrobium katesii RepID=UPI00037EC145
qs_4_scaffold_249_22
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

23036..23458
DNA (423bp) protein (141aa)
Chemotaxis protein CheW n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CV25_9EURY
Chemotaxis protein CheW {ECO:0000313|EMBL:ELZ25749.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
cheW1; chemotaxis protein CheW
qs_4_scaffold_249_23
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

23570..24295
DNA (726bp) protein (242aa)
Circadian regulator n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CR61_9EURY
Circadian regulator {ECO:0000313|EMBL:ELZ25750.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9-1.
circadian clock protein KaiC
qs_4_scaffold_249_24
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24441..24776
DNA (336bp) protein (112aa)
Helix-turn-helix domain protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PIX3_9EURY
transcriptional regulator-like protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ERJ05926.1}; Transcriptional regulator-like protein {ECO:0000313|EMBL:CCQ32939.1}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Haloba
qs_4_scaffold_249_25
Halorhabdus utahensis, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

25045..25365
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) RepID=C7NUW7_HALUD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV11130.1}; TaxID=519442 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus utahensis (stra
qs_4_scaffold_249_26
Haloarcula californiae, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

25500..25859
DNA (360bp) protein (120aa)
Chemotaxis protein CheY n=9 Tax=Haloarcula RepID=Q5V0C1_HALMA
chemotaxis protein CheY
Chemotaxis protein CheY {ECO:0000313|EMBL:EMA16506.1}; TaxID=662475 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula californiae ATCC
qs_4_scaffold_249_27
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

25862..27076
DNA (1215bp) protein (405aa)
CheC, inhibitor of MCP methylation n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NX08_HALMD
CheC, inhibitor of MCP methylation
CheC, inhibitor of MCP methylation {ECO:0000313|EMBL:ACV46373.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium
qs_4_scaffold_249_28
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

27078..27599
DNA (522bp) protein (174aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacte
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CR71_9EURY
chemoreceptor glutamine deamidase CheD
qs_4_scaffold_249_29
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

27730..28170
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NWZ9_HALMD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV46364.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukohataei
Displaying items 1-30 of 43 in total

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