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qs_4_scaffold_297

Search features with annotation key words

Displaying items 1-30 of 34 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_4_scaffold_297_1
unknown

Not on your lists

123..620
DNA (498bp) protein (166aa)

This feature has no annotations

qs_4_scaffold_297_2
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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724..2124
DNA (1401bp) protein (467aa)
signal recognition particle n=1 Tax=Halomicrobium katesii RepID=UPI00036C4149
GTP-binding signal recognition particle SRP54 G-domain-containing protein
Signal recognition particle 54 kDa protein {ECO:0000256|HAMAP-Rule:MF_00306}; Short=SRP54 {ECO:0000256|HAMAP-Rule:MF_00306};; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriale
qs_4_scaffold_297_3
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2272..2751
DNA (480bp) protein (160aa)
Ribonuclease P protein component 2 {ECO:0000256|HAMAP-Rule:MF_00755}; Short=RNase P component 2 {ECO:0000256|HAMAP-Rule:MF_00755};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00755};; Pop5 {ECO:0000256|HA
Ribonuclease P protein component 2 n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CQH0_9EURY
ribonuclease P
qs_4_scaffold_297_4
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2754..3521
DNA (768bp) protein (256aa)
psmA4; proteasome subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] id=24644674 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552};; 20S proteasome alpha subunit {
psmA4; proteasome subunit alpha (EC:3.4.25.1)
qs_4_scaffold_297_5
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3614..4339
DNA (726bp) protein (242aa)
RNA-associated protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CLK5_9EURY
RNA-associated protein {ECO:0000313|EMBL:ELZ24126.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9
RNA-associated protein
qs_4_scaffold_297_6
Natrinema versiforme, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(4463..5524)
DNA (1062bp) protein (354aa)
Methionine synthase {ECO:0000256|HAMAP-Rule:MF_00288, ECO:0000313|EMBL:ELY66827.1}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00288};; Homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00288}; Tax
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14)
Probable methylcobalamin:homocysteine methyltransferase n=1 Tax=Natrinema versiforme JCM 10478 RepID=L9XZB8_9EURY
qs_4_scaffold_297_7
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(5521..6558)
DNA (1038bp) protein (346aa)
Cobalamin-independent synthase MetE domain protein n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NZK6_HALMD
Cobalamin-independent synthase MetE domain-containing protein
Cobalamin-independent synthase MetE domain protein {ECO:0000313|EMBL:ACV48774.1}; Flags: Precursor;; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halo
qs_4_scaffold_297_8
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(6610..6984)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CS72_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ26051.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 135
hypothetical protein
qs_4_scaffold_297_9
Haloarcula sp. CBA1115, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6999..8966)
DNA (1968bp) protein (656aa)
Chaperone protein DnaK n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KLM7_HALAR
dnaK; molecular chaperone DnaK
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP
qs_4_scaffold_297_10
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(9120..9932)
DNA (813bp) protein (271aa)
Protein GrpE n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CR18_9EURY
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacter
molecular chaperone GrpE
qs_4_scaffold_297_11
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(10183..11313)
DNA (1131bp) protein (377aa)
Carbohydrate ABC transporter ATP-binding protein, CUT1 family n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NVI1_HALBP
sugar ABC transporter ATP-binding protein
Carbohydrate ABC transporter ATP-binding protein, CUT1 family {ECO:0000313|EMBL:ADQ68865.1}; Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:ELY28707.1}; TaxID=469382 species="Archaea; Eur
qs_4_scaffold_297_12
Halorubrum arcis, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11527..13884)
DNA (2358bp) protein (786aa)
alpha-glucosidase (EC:3.2.1.-)
Alpha-glucosidase n=1 Tax=Halorubrum arcis JCM 13916 RepID=M0PJ16_9EURY
Alpha-glucosidase {ECO:0000313|EMBL:EMA69933.1}; TaxID=1230455 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum arcis JCM 13916.;"
qs_4_scaffold_297_13
Halorubrum kocurii, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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14041..15300
DNA (1260bp) protein (420aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Halorubrum kocurii JCM 14978 RepID=M0PMT7_9EURY
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EMA70050.1}; TaxID=1230456 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorub
mandelate racemase/muconate lactonizing protein
qs_4_scaffold_297_14

Not on your lists

15410..16378
DNA (969bp) protein (323aa)
serA3; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
Lactate dehydrogenase related dehydrogenase n=1 Tax=uncultured archaeon A07HB70 RepID=V4XFV0_9ARCH
Lactate dehydrogenase related dehydrogenase {ECO:0000313|EMBL:ESS06999.1}; TaxID=1412872 species="Archaea; environmental samples.;" source="uncultured archaeon A07HB70.;"
qs_4_scaffold_297_15
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(16533..17399)
DNA (867bp) protein (289aa)
ABC-type sugar transport system, permease component n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0KBM5_HALHC
ABC-type sugar transport system, permease component
Trehalose transport system permease protein SugB {ECO:0000313|EMBL:KJF16827.1}; TaxID=1280514 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" sour
qs_4_scaffold_297_16
Thermoanaerobacter sp. YS13, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17401..18360)
DNA (960bp) protein (320aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Thermoanaerobacter italicus (strain DSM 9252 / Ab9) RepID=D3T700_THEIA
ABC transporter permease {ECO:0000313|EMBL:KHO60967.1}; TaxID=1511746 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoan
binding-protein-dependent transporters inner membrane component
qs_4_scaffold_297_17
Natronorubrum sulfidifaciens, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18508..18678
DNA (171bp) protein (57aa)
Uncharacterized protein {ECO:0000313|EMBL:ELY47581.1}; TaxID=1230460 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum sulfidifaciens J
qs_4_scaffold_297_18
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18678..19694
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CJR2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ22124.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 135
hypothetical protein
qs_4_scaffold_297_19
unknown

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20084..20278
DNA (195bp) protein (65aa)

This feature has no annotations

qs_4_scaffold_297_20
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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20343..20657
DNA (315bp) protein (105aa)
UxaA family hydrolase n=2 Tax=Paenibacillus mucilaginosus RepID=F8FCT2_PAEMK
UxaA family hydrolase
D-galactarate dehydratase {ECO:0000313|EMBL:AFH60514.1}; TaxID=997761 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus K02.;"
qs_4_scaffold_297_21
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20668..21831
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Salsuginibacillus kocurii RepID=UPI0003683DA1
Uncharacterized protein {ECO:0000313|EMBL:KJS18889.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
carbohydrate hydrolase
qs_4_scaffold_297_22
Halarchaeum acidiphilum, Halarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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21840..22844
DNA (1005bp) protein (335aa)
(R)-2-hydroxyacid dehydrogenase n=1 Tax=Halarchaeum acidiphilum MH1-52-1 RepID=U2YGH3_9EURY
(R)-2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:GAD53366.1}; TaxID=1261545 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae.;" source="Halarchaeum acidiphilum MH1-52-
malate dehydrogenase
qs_4_scaffold_297_23
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

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22945..24330
DNA (1386bp) protein (462aa)
Extracellular solute-binding protein, family 1 n=1 Tax=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) RepID=B9K7M3_THENN
sugar ABC transporter periplasmic sugar-binding protein Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
Extracellular solute-binding protein, family 1 precursor
qs_4_scaffold_297_24
unknown

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24436..25044
DNA (609bp) protein (203aa)

This feature has no annotations

qs_4_scaffold_297_25

Not on your lists

comp(24917..25804)
DNA (888bp) protein (296aa)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=1 Tax=uncultured archaeon A07HR67 RepID=V4XVZ9_9ARCH
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:ESS04376.1}; TaxID=1412871 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR67.;"
dihydrodipicolinate synthase/N-acetylneuraminate lyase
qs_4_scaffold_297_26
Methanothermobacter marburgensis, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

25893..27359
DNA (1467bp) protein (489aa)
aldehyde dehydrogenase (EC:1.2.1.-)
Aldehyde dehydrogenase {ECO:0000313|EMBL:ADL58950.1}; EC=1.2.1.- {ECO:0000313|EMBL:ADL58950.1};; TaxID=79929 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae;
Uncharacterized protein n=1 Tax=haloarchaeon 3A1_DGR RepID=T0TU69_9EURY
qs_4_scaffold_297_27
Haloferax sp. ATCC BAA-644, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(27374..28456)
DNA (1083bp) protein (361aa)
Xylose dehydrogenase (NAD/NADP) n=3 Tax=Haloferax RepID=M0FPT8_9EURY
Xylose dehydrogenase (NAD/NADP) {ECO:0000313|EMBL:ELZ70888.1}; TaxID=1227462 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sp. ATCC BAA-6
xylose dehydrogenase (NAD/NADP)
qs_4_scaffold_297_28
Natrinema gari, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(28545..29462)
DNA (918bp) protein (306aa)
HhH-GPD family protein n=1 Tax=Natrinema gari JCM 14663 RepID=L9Z942_9EURY
HhH-GPD family protein
HhH-GPD family protein {ECO:0000313|EMBL:ELY82899.1}; TaxID=1230459 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema gari JCM 14663.;"
qs_4_scaffold_297_29
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(29515..30141)
DNA (627bp) protein (209aa)
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00351}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00351};; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobac
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PH63_9EURY
fibrillarin
qs_4_scaffold_297_30
Natronobacterium gregoryi, Natronobacterium, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(30138..30986)
DNA (849bp) protein (283aa)
Pre-mRNA processing ribonucleoprotein, binding domain-containing protein n=1 Tax=Natronobacterium gregoryi (strain ATCC 43098 / CCM 3738 / NCIMB 2189 / SP2) RepID=L0AE73_NATGS
rRNA biogenesis protein
Pre-mRNA processing ribonucleoprotein, binding domain-containing protein {ECO:0000313|EMBL:ELY66754.1}; rRNA biogenesis protein {ECO:0000313|EMBL:AFZ71452.1}; TaxID=797304 species="Archaea; Euryarchae
Displaying items 1-30 of 34 in total

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