ggKbase home page

sw_12_scaffold_267

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_267_1
Natronococcus occultus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1..4527)
-----------------
DNA (4527bp)
protein (1509aa)
DNA polymerase II large subunit {ECO:0000256|HAMAP-Rule:MF_00324}; Short=Pol II {ECO:0000256|HAMAP-Rule:MF_00324};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00324};; TaxID=694430 species="Archaea; Euryar
DNA polymerase type II, large subunit (EC:2.7.7.7)
DNA polymerase II large subunit n=1 Tax=Natronococcus occultus SP4 RepID=L0K315_9EURY
sw_12_scaffold_267_2
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4527..4949)
-----------------
DNA (423bp)
protein (141aa)
PolA operon protein ( DNA-binding protein) n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D3V3_9EURY
PolA operon protein ( DNA-binding protein) {ECO:0000313|EMBL:ELZ29503.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimp
DUF296 family protein
sw_12_scaffold_267_3
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5062..5322)
-----------------
DNA (261bp)
protein (87aa)
ORC1-type DNA replication protein n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ITZ4_NATPD
cdc6_1; cell division control protein cdc6-like protein
ORC1-type DNA replication protein {ECO:0000256|HAMAP-Rule:MF_01407}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas
sw_12_scaffold_267_4
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5286..6611)
-----------------
DNA (1326bp)
protein (442aa)
ORC1-type DNA replication protein n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ITZ4_NATPD
cdc6_1; cell division control protein cdc6-like protein
ORC1-type DNA replication protein {ECO:0000256|HAMAP-Rule:MF_01407}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas
sw_12_scaffold_267_5
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7839..9098
-----------------
DNA (1260bp)
protein (420aa)
GTP-binding protein Era n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ITZ5_NATPD
GTP-binding protein
Origin-associated GTP-binding protein OapA {ECO:0000313|EMBL:CAI48388.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natrono
sw_12_scaffold_267_6
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9102..9491
-----------------
DNA (390bp)
protein (130aa)
Uncharacterized protein n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ITZ6_NATPD
hypothetical protein
Origin-associated protein OapB {ECO:0000313|EMBL:CAI48387.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharao
sw_12_scaffold_267_7
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9498..10589
-----------------
DNA (1092bp)
protein (364aa)
Uncharacterized protein n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XMW7_NATM8
hypothetical protein
Origin-associated protein OapC {ECO:0000313|EMBL:CCQ35214.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas moolap
sw_12_scaffold_267_8
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10632..12098
-----------------
DNA (1467bp)
protein (489aa)
MATE efflux family protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CYA0_9EURY
MATE efflux family protein {ECO:0000313|EMBL:ELZ28206.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense
MATE efflux family protein
sw_12_scaffold_267_9
Natronorubrum tibetense, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12180..12584)
-----------------
DNA (405bp)
protein (135aa)
Endoribonuclease L-PSP n=1 Tax=Natronorubrum tibetense GA33 RepID=L9VTC8_9EURY
Endoribonuclease L-PSP {ECO:0000313|EMBL:ELY40306.1}; TaxID=1114856 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum tibetense GA33.;"
endoribonuclease L-PSP
sw_12_scaffold_267_10
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12756..13547
-----------------
DNA (792bp)
protein (264aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0NBV8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA55038.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
hypothetical protein
sw_12_scaffold_267_11
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13544..14122)
-----------------
DNA (579bp)
protein (193aa)
Uncharacterized protein n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0M5C5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA40911.1}; TaxID=1227454 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma nitratireducens JCM
hypothetical protein
sw_12_scaffold_267_12
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14576..15268
-----------------
DNA (693bp)
protein (231aa)
Methyltransferase type 11 n=1 Tax=Halogranum salarium B-1 RepID=J3JGB0_9EURY
Methyltransferase type 11 {ECO:0000313|EMBL:EJN59941.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
scm; 24-sterol C-methyltransferase
sw_12_scaffold_267_13
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

15321..16763
-----------------
DNA (1443bp)
protein (481aa)
Amino acid permease-associated region n=1 Tax=Halogranum salarium B-1 RepID=J3JGT2_9EURY
Amino acid permease-associated region {ECO:0000313|EMBL:EJN60366.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
cat2; cationic amino acid transport protein
sw_12_scaffold_267_14
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16785..17438
-----------------
DNA (654bp)
protein (218aa)
TrkA protein n=1 Tax=Halogranum salarium B-1 RepID=J2ZI32_9EURY
TrkA protein {ECO:0000313|EMBL:EJN60365.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
trkA; K+ transport systems, NAD-binding protein
sw_12_scaffold_267_15
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17450..18007)
-----------------
DNA (558bp)
protein (186aa)
DUF1684 family protein n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ITG3_NATPD
hypothetical protein
DUF1684 family protein {ECO:0000313|EMBL:CAI48570.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaonis (str
sw_12_scaffold_267_16
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18092..19255)
-----------------
DNA (1164bp)
protein (388aa)
Acyl-CoA dehydrogenase 1 n=1 Tax=Halogranum salarium B-1 RepID=J2ZG60_9EURY
Acyl-CoA dehydrogenase 1 {ECO:0000313|EMBL:EJN59660.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
acyl-CoA dehydrogenase
sw_12_scaffold_267_17
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19502..20209)
-----------------
DNA (708bp)
protein (236aa)
Glutamine amidotransferase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D0K9_9EURY
Glutamine amidotransferase {ECO:0000313|EMBL:ELZ28227.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense
GMP synthase
sw_12_scaffold_267_18
Haloarcula sinaiiensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20253..20768)
-----------------
DNA (516bp)
protein (172aa)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase n=1 Tax=Haloarcula sinaiiensis ATCC 33800 RepID=M0K4G4_9EURY
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:EMA14740.1}; TaxID=662476 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; H
pca; 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
sw_12_scaffold_267_19
Halorubrum aidingense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20887..21597)
-----------------
DNA (711bp)
protein (237aa)
Methyltransferase type 11 n=1 Tax=Halorubrum aidingense JCM 13560 RepID=M0PCJ2_9EURY
Methyltransferase type 11 {ECO:0000313|EMBL:EMA67573.1}; TaxID=1230454 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum aidingense JCM 135
type 11 methyltransferase
sw_12_scaffold_267_20
Halorubrum kocurii, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(21594..22358)
-----------------
DNA (765bp)
protein (255aa)
Uncharacterized protein n=1 Tax=Halorubrum kocurii JCM 14978 RepID=M0P3E1_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA64343.1}; TaxID=1230456 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum kocurii JCM 14978.;"
hypothetical protein
sw_12_scaffold_267_21
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22438..23529
-----------------
DNA (1092bp)
protein (364aa)
sufS2; probable cysteine desulfurase (EC:2.8.1.7)
Probable cysteine desulfurase {ECO:0000313|EMBL:CCQ35220.1}; EC=2.8.1.7 {ECO:0000313|EMBL:CCQ35220.1};; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; N
Probable cysteine desulfurase n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XMW4_NATM8
sw_12_scaffold_267_22
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(23827..26601)
-----------------
DNA (2775bp)
protein (925aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017576}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017588};; Alanyl-tRNA synthetase {ECO:0000256
alaS; alanine--tRNA ligase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1Y551_NATM8
sw_12_scaffold_267_23
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

26865..27779
-----------------
DNA (915bp)
protein (305aa)
GAF sensor protein n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KQ21_HALAR
GAF sensor protein {ECO:0000313|EMBL:EMA23427.1}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentinensis DSM 122
GAF sensor protein
sw_12_scaffold_267_24
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

27776..28456
-----------------
DNA (681bp)
protein (227aa)
Uncharacterized protein n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KQD2_HALAR
Uncharacterized protein {ECO:0000313|EMBL:EMA23426.1}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentinensis DS
hypothetical protein
sw_12_scaffold_267_25
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(28556..32860)
-----------------
DNA (4305bp)
protein (1435aa)
Replication factor C small subunit n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PGH3_9EURY
replication factor C small subunit
Replication factor C small subunit {ECO:0000313|EMBL:CCQ33862.1}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tia
sw_12_scaffold_267_26
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(32952..33992)
-----------------
DNA (1041bp)
protein (347aa)
arcB; ornithine cyclodeaminase (EC:4.3.1.12)
Alanine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00935}; Short=AlaDH {ECO:0000256|HAMAP-Rule:MF_00935};; EC=1.4.1.1 {ECO:0000256|HAMAP-Rule:MF_00935};; TaxID=348780 species="Archaea; Euryarchaeota; Ha
Alanine dehydrogenase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IU68_NATPD
Displaying 26 items

View Taxonomy