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sw_7_scaffold_54

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_7_scaffold_54_1
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2..1504)
DNA (1503bp) protein (501aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000256|SAAS:SAAS00016154}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000256|SAAS:SAAS00088701};; Glutamyl-tRNA synthetase {ECO:00
gltX; glutamyl-tRNA synthetase (EC:6.1.1.18)
Glutamate--tRNA ligase n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N0S2_9EURY
sw_7_scaffold_54_2
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1620..1898)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CL85_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ24025.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 135
hypothetical protein
sw_7_scaffold_54_3
Natronorubrum sulfidifaciens, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2078..3154)
DNA (1077bp) protein (359aa)
idsA_3; trifunctional short-chain (E)-prenyl diphosphate synthase ( dimethylallyltransferase / geranyltranstransferase / farnesytranstransferase ) (EC:2.5.1.1 2.5.1.10 2.5.1.29)
Dimethylallyltranstransferase n=1 Tax=Natronorubrum sulfidifaciens JCM 14089 RepID=L9WG04_9EURY
Dimethylallyltranstransferase {ECO:0000313|EMBL:ELY48206.1}; TaxID=1230460 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum sulfidifac
sw_7_scaffold_54_4
Natrialba taiwanensis, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3258..4604)
DNA (1347bp) protein (449aa)
Ribonuclease J {ECO:0000256|HAMAP-Rule:MF_01492}; Short=RNase J {ECO:0000256|HAMAP-Rule:MF_01492};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01492};; TaxID=1230458 species="Archaea; Euryarchaeota; Haloba
Beta-lactamase n=2 Tax=Natrialba RepID=M0AAT8_9EURY
putative hydrolase of the metallo-beta-lactamase superfamily
sw_7_scaffold_54_5
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4801..5130)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N6F1_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA52275.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
hypothetical protein
sw_7_scaffold_54_6
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5202..6002)
DNA (801bp) protein (267aa)
Isopentenyl phosphate kinase {ECO:0000256|PIRNR:PIRNR016496}; Short=IPK {ECO:0000256|PIRNR:PIRNR016496};; EC=2.7.4.26 {ECO:0000256|PIRNR:PIRNR016496};; TaxID=1227455 species="Archaea; Euryarchaeota; H
Isopentenyl phosphate kinase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MRH4_9EURY
aspartate/glutamate/uridylate kinase
sw_7_scaffold_54_7
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5999..7012)
DNA (1014bp) protein (338aa)
Mevalonate kinase {ECO:0000256|HAMAP-Rule:MF_00217}; Short=MK {ECO:0000256|HAMAP-Rule:MF_00217};; Short=MVK {ECO:0000256|HAMAP-Rule:MF_00217};; EC=2.7.1.36 {ECO:0000256|HAMAP-Rule:MF_00217};; TaxID=12
Mevalonate kinase n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N3V9_9EURY
mevalonate kinase
sw_7_scaffold_54_8
Natrialba asiatica, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(7319..8176)
DNA (858bp) protein (286aa)
30S ribosomal protein S2 n=1 Tax=Natrialba asiatica (strain ATCC 700177 / DSM 12278 / JCM 9576 / FERM P-10747 / NBRC 102637 / 172P1) RepID=M0AUV3_NATA1
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291, ECO:0000256|SAAS:SAAS00012212}; TaxID=29540 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="
30S ribosomal protein S2
sw_7_scaffold_54_9
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8181..9392)
DNA (1212bp) protein (404aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000
eno; enolase (EC:4.2.1.11)
Enolase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MRT4_9EURY
sw_7_scaffold_54_10
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9385..9594)
DNA (210bp) protein (70aa)
DNA-directed RNA polymerase subunit K {ECO:0000256|HAMAP-Rule:MF_00192}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00192};; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Ha
DNA-directed RNA polymerase subunit K n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4HNG4_9EURY
DNA-directed RNA polymerase subunit K/omega
sw_7_scaffold_54_11
Halorubrum lipolyticum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(9591..9785)
DNA (195bp) protein (65aa)
DNA-directed RNA polymerase subunit N {ECO:0000256|HAMAP-Rule:MF_00250}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00250};; TaxID=1227482 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Halo
DNA-directed RNA polymerase subunit N n=1 Tax=Halorubrum sp. T3 RepID=UPI000381A29B
DNA-directed RNA polymerase subunit N
sw_7_scaffold_54_12
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(9831..10226)
DNA (396bp) protein (132aa)
30S ribosomal protein S9 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MP64_9EURY
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003817}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;"
rps9p; 30S ribosomal protein S9P
sw_7_scaffold_54_13
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(10220..10663)
DNA (444bp) protein (148aa)
50S ribosomal protein L13 n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0L322_9EURY
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma lacisalsi AJ5.;
rpl13p; 50S ribosomal protein L13P
sw_7_scaffold_54_14
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(10660..11031)
DNA (372bp) protein (124aa)
50S ribosomal protein L18e n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MRS9_9EURY
50S ribosomal protein L18e {ECO:0000256|HAMAP-Rule:MF_00329, ECO:0000256|RuleBase:RU000573}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.
rpl18A; 50S ribosomal protein L18e
sw_7_scaffold_54_trna_2
unknown

Not on your lists

comp(11189..11273)
DNA (85bp)
transferRNA
sw_7_scaffold_54_15
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11424..12212)
DNA (789bp) protein (263aa)
DNA-directed RNA polymerase subunit D {ECO:0000256|HAMAP-Rule:MF_00320}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00320};; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Hal
DNA-directed RNA polymerase subunit D (EC:2.7.7.6)
DNA-directed RNA polymerase subunit D n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QSE6_9EURY
sw_7_scaffold_54_16
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(12214..12615)
DNA (402bp) protein (134aa)
30S ribosomal protein S11 n=1 Tax=Halogranum salarium B-1 RepID=J3EW84_9EURY
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310, ECO:0000313|EMBL:EJN59087.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogran
rps11P; 30S ribosomal protein S11
sw_7_scaffold_54_17
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(12632..13159)
DNA (528bp) protein (176aa)
30S ribosomal protein S4 n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J328_HALJB
rps4p; 30S ribosomal protein S4P
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000256|SAAS:SAAS00016650}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccu
sw_7_scaffold_54_18
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(13160..13681)
DNA (522bp) protein (174aa)
30S ribosomal protein S13 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MSK5_9EURY
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharoly
SSU ribosomal protein S13P
sw_7_scaffold_54_trna_1
unknown

Not on your lists

comp(13731..13816)
DNA (86bp)
transferRNA
sw_7_scaffold_54_19
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14143..14337
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MUJ9_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA49412.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
hypothetical protein
sw_7_scaffold_54_20
Felis catus, Felis, Carnivora, Mammalia, Chordata, Metazoa

Not on your lists

comp(14600..16057)
DNA (1458bp) protein (486aa)
hypothetical protein n=1 Tax=Thalassospira lucentensis RepID=UPI0003B3F0AB
Dentin sialophosphoprotein {ECO:0000313|EMBL:ACN91271.1}; Flags: Fragment;; TaxID=9685 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Ca
calcium binding hemolysin protein
sw_7_scaffold_54_21
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16278..18092
DNA (1815bp) protein (605aa)
Prolyl oligopeptidase family protein n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KV78_HALAR
Prolyl oligopeptidase family protein {ECO:0000313|EMBL:EMA23635.1}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula arg
dipeptidyl aminopeptidase/acylaminoacyl peptidase
sw_7_scaffold_54_22
Natrinema altunense, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18089..18460)
DNA (372bp) protein (124aa)
Alpha/beta hydrolase fold protein n=1 Tax=Natrinema altunense JCM 12890 RepID=L9ZGC8_9EURY
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ELY84677.1}; TaxID=1227494 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema altunense JCM
alpha/beta hydrolase fold protein
sw_7_scaffold_54_23
Halorubrum tebenquichense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18415..18870)
DNA (456bp) protein (152aa)
Alpha/beta hydrolase fold protein n=1 Tax=Halorubrum hochstenium ATCC 700873 RepID=M0F3H5_9EURY
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ELZ38626.1}; TaxID=1227485 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum tebenquich
alpha/beta hydrolase fold protein
sw_7_scaffold_54_24
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19306..20364)
DNA (1059bp) protein (353aa)
egsA; NAD(P)-dependent glycerol-1-phosphate dehydrogenase (EC:1.1.1.261)
Glycerol-1-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M5R2_9EURY
Glycerol-1-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00497, ECO:0000256|SAAS:SAAS00015263}; Short=G1P dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00497};; Short=G1PDH {ECO:0000256|HAMA
sw_7_scaffold_54_25
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20416..24990)
DNA (4575bp) protein (1525aa)
glutamate synthase (EC:1.4.7.1)
Glutamate synthase, large subunit n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N788_9EURY
Glutamate synthase, large subunit {ECO:0000313|EMBL:EMA53423.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifo
sw_7_scaffold_54_26
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(25237..26712)
DNA (1476bp) protein (492aa)
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=795797 species="Archaea; Euryarc
Proline--tRNA ligase n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J7U6_HALJB
sw_7_scaffold_54_27
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

26855..27880
DNA (1026bp) protein (342aa)
Oxidoreductase n=1 Tax=Halogranum salarium B-1 RepID=J3JGM8_9EURY
Oxidoreductase {ECO:0000313|EMBL:EJN60231.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
oxidoreductase
sw_7_scaffold_54_28
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


28029..28358
DNA (330bp) protein (110aa)
30S ribosomal protein S10 n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M183_9EURY
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinens
30S ribosomal protein S10
Displaying items 1-30 of 38 in total

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