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SW_7_Halobacteria_71_33

In projects: SW_7  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: SW_7_UNK

Properties

Avg. coverage: 33.29 Longest contig: 41.25 Kbp Bin length: 1.75 Mbp GC content: 70.95 %
Contigs count: 142 Features count: 1861 rRNAs count: 0 tRNAs count: 27

Genome completeness

near complete RP 34 / 55 MC: 6 BSCG 25 / 51 MC: 3 ASCG 37 / 38 MC: 2
Displaying items 51-100 of 142 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_7_scaffold_1297
Class: Halobacteria (71.43%)
14 13790 bp 68.80 38.95 93.49
sw_7_scaffold_897
Class: Halobacteria (71.43%)
14 16532 bp 68.98 34.80 84.74
sw_7_scaffold_1440
Class: Halobacteria (85.71%)
14 13941 bp 71.34 35.98 88.62
sw_7_scaffold_962
Class: Halobacteria (92.86%)
14 10701 bp 70.65 31.03 86.26
sw_7_scaffold_696
Order: Halobacteriales (76.92%)
13 15056 bp 73.00 34.66 88.29
sw_7_scaffold_2335
Class: Halobacteria (92.31%)
13 11933 bp 70.03 35.01 86.33
sw_7_scaffold_1570
Class: Halobacteria (84.62%)
13 11293 bp 71.15 31.78 76.30
sw_7_scaffold_3128
Order: Halobacteriales (58.33%)
12 9945 bp 72.23 32.46 87.93
sw_7_scaffold_624
Order: Halobacteriales (50%)
12 12906 bp 70.30 36.77 88.42
sw_7_scaffold_2215
Order: Halobacteriales (50%)
12 10831 bp 69.30 33.96 92.65
sw_7_scaffold_765
Order: Halobacteriales (50%)
12 9306 bp 70.84 33.82 89.78
sw_7_scaffold_1363
Class: Halobacteria (83.33%)
12 13971 bp 71.31 32.93 90.53
sw_7_scaffold_2469
Class: Halobacteria (83.33%)
12 11811 bp 70.81 36.29 91.06
sw_7_scaffold_2810
Order: Natrialbales (58.33%)
12 11479 bp 71.24 34.11 84.83
sw_7_scaffold_1644
Class: Halobacteria (83.33%)
12 9475 bp 69.75 35.03 86.44
sw_7_scaffold_5925
Class: Halobacteria (75%)
12 8701 bp 69.77 31.12 83.13
sw_7_scaffold_549
Order: Natrialbales (66.67%)
12 17757 bp 68.96 35.30 78.80
sw_7_scaffold_1125
Order: Halobacteriales (63.64%)
11 10771 bp 72.50 32.75 85.03
sw_7_scaffold_2438
Order: Natrialbales (54.55%)
11 9656 bp 71.44 33.07 85.23
sw_7_scaffold_2556
Class: Halobacteria (81.82%)
11 7337 bp 70.86 30.43 89.55
sw_7_scaffold_1086
Class: Halobacteria (63.64%)
11 9367 bp 68.91 28.77 79.56
sw_7_scaffold_898
Class: Halobacteria (72.73%)
11 8604 bp 71.76 35.09 91.95
sw_7_scaffold_593
Class: Halobacteria (81.82%)
11 11683 bp 71.33 32.98 77.55
sw_7_scaffold_2202
Order: Natrialbales (60%)
10 11789 bp 69.97 34.37 77.67
sw_7_scaffold_2305
Order: Halobacteriales (50%)
10 10542 bp 72.68 36.53 88.65
sw_7_scaffold_2641
Order: Halobacteriales (60%)
10 10116 bp 70.43 31.97 89.29
sw_7_scaffold_6119
Class: Halobacteria (60%)
10 7249 bp 72.41 31.80 88.81
sw_7_scaffold_2483
Class: Halobacteria (80%)
10 8143 bp 70.97 30.59 84.92
sw_7_scaffold_3391
Class: Halobacteria (80%)
10 7354 bp 71.28 33.08 87.99
sw_7_scaffold_989
Class: Halobacteria (88.89%)
9 8096 bp 71.10 34.72 87.67
sw_7_scaffold_5769
Class: Halobacteria (55.56%)
9 7165 bp 69.76 34.07 76.02
sw_7_scaffold_2067
Class: Halobacteria (77.78%)
9 9470 bp 70.53 36.43 86.99
sw_7_scaffold_2529
Order: Halobacteriales (66.67%)
9 6671 bp 70.33 37.45 90.08
sw_7_scaffold_1334
Order: Halobacteriales (77.78%)
9 8147 bp 70.65 32.63 84.99
sw_7_scaffold_2665
Class: Halobacteria (88.89%)
9 7814 bp 70.51 35.41 82.54
sw_7_scaffold_3496
Order: Halobacteriales (66.67%)
9 7029 bp 70.18 31.24 88.82
sw_7_scaffold_1268
Class: Halobacteria (77.78%)
9 8967 bp 69.44 29.45 80.63
sw_7_scaffold_1317
Order: Halobacteriales (66.67%)
9 9016 bp 70.87 30.49 92.84
sw_7_scaffold_1200
Order: Halobacteriales (66.67%)
9 13006 bp 70.90 36.50 90.26
sw_7_scaffold_2815
Class: Halobacteria (77.78%)
9 9790 bp 69.06 31.92 81.76
sw_7_scaffold_2168
Order: Halobacteriales (66.67%)
9 10745 bp 72.66 36.88 81.92
sw_7_scaffold_3243
Order: Halobacteriales (55.56%)
9 8164 bp 71.17 28.97 74.12
sw_7_scaffold_1625
Order: Halobacteriales (66.67%)
9 8329 bp 70.45 39.09 80.57
sw_7_scaffold_904
Class: Halobacteria (100%)
9 8571 bp 72.78 36.23 90.16
sw_7_scaffold_1172
Class: Halobacteria (75%)
8 7358 bp 73.06 39.44 91.04
sw_7_scaffold_1355
Order: Halobacteriales (75%)
8 7376 bp 71.03 32.93 85.05
sw_7_scaffold_3826
Order: Halobacteriales (50%)
8 7719 bp 72.46 34.41 75.28
sw_7_scaffold_5901
Order: Natrialbales (62.5%)
8 7106 bp 71.69 32.59 80.85
sw_7_scaffold_2705
Order: Halobacteriales (50%)
8 5668 bp 70.78 33.26 87.12
sw_7_scaffold_3932
Class: Halobacteria (100%)
8 7112 bp 72.82 39.72 92.21
Displaying items 51-100 of 142 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.