ggKbase home page

sw_7_scaffold_235

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_7_scaffold_235_1
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(121..5805)
DNA (5685bp) protein (1895aa)
DNA polymerase II large subunit {ECO:0000313|EMBL:ELZ29504.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ELZ29504.1};; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae;
DNA polymerase II, large subunit DP2 (EC:2.7.7.7)
DNA polymerase II large subunit n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D5U7_9EURY
sw_7_scaffold_235_2
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5807..6229)
DNA (423bp) protein (141aa)
Putative PD1-like DNA-binding protein n=1 Tax=halophilic archaeon J07HX64 RepID=U1NZC6_9EURY
Putative PD1-like DNA-binding protein {ECO:0000313|EMBL:ERH09620.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
polA operon protein ( DNA-binding protein)
sw_7_scaffold_235_3
unknown

Not on your lists

comp(6538..7248)
DNA (711bp) protein (237aa)

This feature has no annotations

sw_7_scaffold_235_4
Halorubrum hochstenium, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7724..9598
DNA (1875bp) protein (625aa)
Nucleotide sugar dehydrogenase n=1 Tax=Halorubrum hochstenium ATCC 700873 RepID=M0EXW6_9EURY
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:ELZ52535.1}; TaxID=1227481 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum hochstenium A
UDP-glucose 6-dehydrogenase
sw_7_scaffold_235_5
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9722..10588
DNA (867bp) protein (289aa)
Putative UDP-glucose 6-dehydrogenase n=1 Tax=halophilic archaeon J07HX64 RepID=U1PM84_9EURY
Putative UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:ERH11254.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
UDP-glucose 6-dehydrogenase
sw_7_scaffold_235_6
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10862..11509)
DNA (648bp) protein (216aa)
DNA-binding transcriptional regulator n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W3Y7_9EURY
DNA-binding transcriptional regulator
DNA-binding transcriptional regulator {ECO:0000313|EMBL:AGN00802.1}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeum sp
sw_7_scaffold_235_7
Natrialba taiwanensis, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11564..14497
DNA (2934bp) protein (978aa)
Uncharacterized protein n=1 Tax=Halovivax asiaticus JCM 14624 RepID=M0BCK3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY96779.1}; TaxID=1230458 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba taiwanensis DSM 12281.;"
putative RND superfamily exporter
sw_7_scaffold_235_8
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(14863..16125)
DNA (1263bp) protein (421aa)
Prolyl-tRNA ligase {ECO:0000313|EMBL:EMA31759.1}; EC=6.1.1.15 {ECO:0000313|EMBL:EMA31759.1};; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" so
Prolyl-tRNA ligase n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0LH52_9EURY
prolyl-tRNA synthetase
sw_7_scaffold_235_9
Natrialba chahannaoensis, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16409..17014
DNA (606bp) protein (202aa)
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE n=1 Tax=Natrialba chahannaoensis JCM 10990 RepID=M0AWU7_9EURY
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE {ECO:0000313|EMBL:ELZ02975.1}; TaxID=1227492 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source=
ubiquinone/menaquinone biosynthesis methyltransferase UbiE
sw_7_scaffold_235_10
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

17155..17952
DNA (798bp) protein (266aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NZC9_HALMD
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACV46815.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium
sw_7_scaffold_235_11
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17954..18124)
DNA (171bp) protein (57aa)
Uncharacterized protein {ECO:0000313|EMBL:ERH09895.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
hypothetical protein
sw_7_scaffold_235_12
Haloarcula californiae, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18162..18443
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Haloarcula californiae ATCC 33799 RepID=M0JNT5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA09624.1}; TaxID=662475 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula californiae ATCC
hypothetical protein
sw_7_scaffold_235_13
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18440..18862
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MSQ4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA47779.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
hypothetical protein
sw_7_scaffold_235_14
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19003..19779)
DNA (777bp) protein (259aa)
hypothetical protein id=24645676 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
Uncharacterized protein {ECO:0000313|EMBL:ERH09895.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
hypothetical protein
sw_7_scaffold_235_15
unknown

Not on your lists

comp(19779..19868)
DNA (90bp) protein (30aa)

This feature has no annotations

sw_7_scaffold_235_16
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19939..20184)
DNA (246bp) protein (82aa)
Ferredoxin n=2 Tax=Haloarcula hispanica RepID=G0HQY6_HALHT
ferredoxin
Ferredoxin {ECO:0000313|EMBL:AEM55777.1}; TaxID=634497 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula hispanica (strain ATCC 33960 /
sw_7_scaffold_235_17
Haloferax sp. ATCC BAA-646, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20476..21648
DNA (1173bp) protein (391aa)
Tryptophanyl-tRNA ligase {ECO:0000313|EMBL:ELZ61310.1}; EC=6.1.1.2 {ECO:0000313|EMBL:ELZ61310.1};; TaxID=1227464 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophanyl-tRNA ligase n=3 Tax=Haloferax RepID=M0FMX9_9EURY
sw_7_scaffold_235_18
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21715..22428
DNA (714bp) protein (238aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MAG5_9EURY
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EMA42782.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus
short-chain dehydrogenase/reductase SDR
sw_7_scaffold_235_19
unknown

Not on your lists

comp(22478..22726)
DNA (249bp) protein (83aa)

This feature has no annotations

sw_7_scaffold_235_20
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22729..23568
DNA (840bp) protein (280aa)
DJ-1/PfpI/ThiJ superfamily protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LWZ0_9EURY
DJ-1/PfpI/ThiJ superfamily protein {ECO:0000313|EMBL:EMA36610.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamel
hypothetical protein
sw_7_scaffold_235_21
Natronococcus amylolyticus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(23604..23849)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Natronococcus amylolyticus DSM 10524 RepID=L9XIC9_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY61367.1}; TaxID=1227497 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus amylolyticus DSM
hypothetical protein
sw_7_scaffold_235_22
unknown

Not on your lists

24018..24266
DNA (249bp) protein (83aa)

This feature has no annotations

sw_7_scaffold_235_23
Natrialba hulunbeirensis, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(24352..24837)
DNA (486bp) protein (162aa)
MaoC domain-containing protein dehydratase n=1 Tax=Natrialba hulunbeirensis JCM 10989 RepID=M0A5A0_9EURY
MaoC domain-containing protein dehydratase {ECO:0000313|EMBL:ELY93930.1}; TaxID=1227493 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba hulun
MaoC domain-containing protein dehydratase
sw_7_scaffold_235_24
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(24965..26221)
DNA (1257bp) protein (419aa)
PAS/PAC sensor protein id=24649249 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
PAS sensor histidine kinase {ECO:0000313|EMBL:ERH10342.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
PAS/PAC sensor protein
sw_7_scaffold_235_25
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(26215..27876)
DNA (1662bp) protein (554aa)
PAS/PAC sensor protein id=24649249 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
PAS sensor histidine kinase {ECO:0000313|EMBL:ERH10342.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
histidine kinase
sw_7_scaffold_235_26
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

28082..28240
DNA (159bp) protein (53aa)
Conserved hypothetical membrane protein, putative glycosyltransferase n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PH29_9EURY
conserved hypothetical membrane protein, putative glycosyltransferase
Conserved hypothetical membrane protein, putative glycosyltransferase {ECO:0000313|EMBL:CCQ32446.1}; Glycosyl transferase protein {ECO:0000313|EMBL:ERJ05666.1}; TaxID=1033806 species="Archaea; Euryarc
sw_7_scaffold_235_27
Natrialba asiatica, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(28306..28512)
DNA (207bp) protein (69aa)
Cold-shock DNA-binding domain protein n=1 Tax=Natrialba asiatica (strain ATCC 700177 / DSM 12278 / JCM 9576 / FERM P-10747 / NBRC 102637 / 172P1) RepID=M0AVV8_NATA1
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:ELZ02680.1}; TaxID=29540 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba asiatica (st
cspA3; cold shock protein
sw_7_scaffold_235_28
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

28765..29829
DNA (1065bp) protein (355aa)
Tryptophanyl-tRNA synthetase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CZV7_9EURY
Tryptophanyl-tRNA synthetase {ECO:0000313|EMBL:ELZ28781.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbaden
tryptophanyl-tRNA synthetase
sw_7_scaffold_235_29
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

29958..30557
DNA (600bp) protein (200aa)
tRNA (pseudouridine(54)-N(1))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00587}; EC=2.1.1.257 {ECO:0000256|HAMAP-Rule:MF_00587};; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobact
tRNA (pseudouridine(54)-N(1))-methyltransferase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D4F2_9EURY
tRNA (pseudouridine-N1)-methyltransferase
sw_7_scaffold_235_30
unknown

Not on your lists

comp(30811..31026)
DNA (216bp) protein (72aa)

This feature has no annotations

Displaying items 1-30 of 36 in total

View Taxonomy