ggKbase home page

RifSed_csp1_13ft_3_scaffold_257

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_13ft_3_scaffold_257_1

Not on your lists

2..1066
-----------------
DNA (1065bp)
protein (355aa)
Putative uncharacterized protein hyuB {ECO:0000313|EMBL:CBH38595.1}; EC=3.5.2.9 {ECO:0000313|EMBL:CBH38595.1};; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
Putative uncharacterized protein hyuB Tax=uncultured archaeon RepID=D1J915_9ARCH
5-oxoprolinase
RifSed_csp1_13ft_3_scaffold_257_2
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

1087..2490
-----------------
DNA (1404bp)
protein (468aa)
Integral membrane protein (DUF112) Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WLX1_METH6
hypothetical protein
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_3_scaffold_257_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(2495..3040)
-----------------
DNA (546bp)
protein (182aa)
nicotinamide-nucleotide adenylyltransferase (EC:2.7.7.1)
Nicotinamide-nucleotide adenylyltransferase Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IGE4_ACIB4
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_3_scaffold_257_4
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(3090..5090)
-----------------
DNA (2001bp)
protein (667aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00037D1C16
ATP-dependent protease Lon
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_13ft_3_scaffold_257_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(5221..5763)
-----------------
DNA (543bp)
protein (181aa)
Putative Ras family protein Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBS9_9ZZZZ
small GTP-binding protein
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_3_scaffold_257_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(5916..6476)
-----------------
DNA (561bp)
protein (187aa)
Putative Ras family protein Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBS9_9ZZZZ
small GTP-binding protein
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_3_scaffold_257_7

Not on your lists


6958..7959
-----------------
DNA (1002bp)
protein (334aa)
50S ribosomal protein L3 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8W8_9EURY
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|SAAS:SAAS00023038}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl3p; 50S ribosomal protein L3P
RifSed_csp1_13ft_3_scaffold_257_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


8076..8945
-----------------
DNA (870bp)
protein (290aa)
50S ribosomal protein L4 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5I4_9EURY
rpl4lp; 50S ribosomal protein L4P
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_3_scaffold_257_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


8942..9229
-----------------
DNA (288bp)
protein (96aa)
50S ribosomal protein L23P Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T519_9EURY
50S ribosomal protein L23P
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_3_scaffold_257_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


9229..9936
-----------------
DNA (708bp)
protein (236aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI000381615B
ribosomal protein L2
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_3_scaffold_257_11
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists


9943..10410
-----------------
DNA (468bp)
protein (156aa)
30S ribosomal protein S19P Tax=Euryarchaeota RepID=M9SJ65_9EURY
30S ribosomal protein S19
Tax=RBG_16_Euryarchaeota_68_13_curated
RifSed_csp1_13ft_3_scaffold_257_12

Not on your lists


10418..10873
-----------------
DNA (456bp)
protein (152aa)
50S ribosomal protein L22 Tax=Methanomassiliicoccus luminyensis RepID=UPI000366A406
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004007}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl22p; 50S ribosomal protein L22
RifSed_csp1_13ft_3_scaffold_257_13

Not on your lists


10875..11759
-----------------
DNA (885bp)
protein (295aa)
30S ribosomal protein S3 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5I7_9EURY
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps3p; 30S ribosomal protein S3P
RifSed_csp1_13ft_3_scaffold_257_14
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


11794..12006
-----------------
DNA (213bp)
protein (71aa)
50S ribosomal protein L29P Tax=Euryarchaeota RepID=M9SFE9_9EURY
LSU ribosomal protein L35e (L29p)
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_3_scaffold_257_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

12045..12296
-----------------
DNA (252bp)
protein (84aa)
Ribonuclease P protein component 1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TB83_METSL
ribonuclease P protein component 1
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_3_scaffold_257_16

Not on your lists


12466..12672
-----------------
DNA (207bp)
protein (69aa)
30S ribosomal protein S17P Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=D3TB39_ACIB4
Archaeal ribosomal protein S17P {ECO:0000313|EMBL:AJS13147.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17P
RifSed_csp1_13ft_3_scaffold_257_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


12669..13067
-----------------
DNA (399bp)
protein (133aa)
50S ribosomal protein L14 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HJQ3_ACIS0
50S ribosomal protein L14P
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_3_scaffold_257_18
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


13077..13436
-----------------
DNA (360bp)
protein (120aa)
50S ribosomal protein L24P Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0ECF5_PYRF1
50S ribosomal protein L24
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_3_scaffold_257_19
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

13444..14166
-----------------
DNA (723bp)
protein (241aa)
30S ribosomal protein S4e Tax=Aciduliprofundum sp. (strain MAR08-339) PF6_ACIS0">RepID=L0HPF6_ACIS0
ribosomal protein S4E
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_3_scaffold_257_20

Not on your lists


14175..14675
-----------------
DNA (501bp)
protein (167aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI000372A27B
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
LSU ribosomal protein L5P
RifSed_csp1_13ft_3_scaffold_257_21
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


14672..14818
-----------------
DNA (147bp)
protein (49aa)
30S ribosomal protein S14 type Z Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8Y0_9EURY
rps14P; 30S ribosomal protein S14P
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_3_scaffold_257_22
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


14828..15217
-----------------
DNA (390bp)
protein (130aa)
30S ribosomal protein S8 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036D309E
SSU ribosomal protein S15Ae (S8p)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_13ft_3_scaffold_257_23
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


15226..15771
-----------------
DNA (546bp)
protein (182aa)
50S ribosomal protein L6 Tax=Methanocaldococcus sp. (strain FS406-22) RepID=D3S6E9_METSF
50S ribosomal protein L6
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_3_scaffold_257_24
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

15773..16534
-----------------
DNA (762bp)
protein (254aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI000377A3F2
LSU ribosomal protein L32e
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_13ft_3_scaffold_257_25
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

16534..16998
-----------------
DNA (465bp)
protein (155aa)
50S ribosomal protein L19e Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BI70_9EURY
LSU ribosomal protein L19E
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_13ft_3_scaffold_257_26

Not on your lists


16995..17495
-----------------
DNA (501bp)
protein (167aa)
50S ribosomal protein L18 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036D4605
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl18p; 50S ribosomal protein L18P
RifSed_csp1_13ft_3_scaffold_257_27
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


17495..18295
-----------------
DNA (801bp)
protein (267aa)
30S ribosomal protein S5 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5J5_9EURY
rps5p; 30S ribosomal protein S5P
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_13ft_3_scaffold_257_28
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

18292..18771
-----------------
DNA (480bp)
protein (160aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI0003676426
rpl30p; 50S ribosomal protein L30P
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_13ft_3_scaffold_257_29

Not on your lists


18771..19205
-----------------
DNA (435bp)
protein (145aa)
Ribosomal protein L15 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7U5F2_9EURY
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L15P
RifSed_csp1_13ft_3_scaffold_257_30
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

19215..20810
-----------------
DNA (1596bp)
protein (532aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00036005F0
preprotein translocase, SecY subunit
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Displaying items 1-30 of 31 in total

View Taxonomy