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RifSed_csp1_16ft_2_scaffold_50004

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_16ft_2_scaffold_50004_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2..397)
DNA (396bp) protein (132aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
sucC; succinyl-CoA synthetase beta chain (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MXK3_ANATU
RifSed_csp1_16ft_2_scaffold_50004_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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473..1381
DNA (909bp) protein (303aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase, catabolic Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQI7_METZD
RifSed_csp1_16ft_2_scaffold_50004_trna_1
unknown

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1388..1472
DNA (85bp)
transferRNA Leu
RifSed_csp1_16ft_2_scaffold_50004_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1475..2110
DNA (636bp) protein (212aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
endonuclease III (EC:4.2.99.18)
Endonuclease III Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EBE9_METEZ
RifSed_csp1_16ft_2_scaffold_50004_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2115..2378
DNA (264bp) protein (88aa)
DNA ligase D-like 3'-phosphoesterase domain-containing protein {ECO:0000313|EMBL:KCZ72645.1}; EC=6.5.1.1 {ECO:0000313|EMBL:KCZ72645.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ATP-dependent DNA ligase (EC:6.5.1.1)
DNA ligase D-like 3'-phosphoesterase domain-containing protein Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TA23_9EURY
RifSed_csp1_16ft_2_scaffold_50004_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2380..2931
DNA (552bp) protein (184aa)
Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase {ECO:0000313|EMBL:KCZ72644.1}; EC=4.1.2.17 {ECO:0000313|EMBL:KCZ72644.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Class II aldolase/adducin family protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EBP8_METEZ
class II aldolase/adducin family protein
RifSed_csp1_16ft_2_scaffold_50004_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3072..3275
DNA (204bp) protein (68aa)
Uncharacterized protein Tax=Methanosarcina RepID=Q8TUK8_METAC
Putative RNA-binding protein, contains TRAM domain {ECO:0000313|EMBL:KCZ72643.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
translation initiation factor IF-2 subunit beta
Displaying 7 items

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