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RifSed_csp2_16ft_3_scaffold_3263

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_3263_1
Spirochaeta sp. JC230, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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244..1638
DNA (1395bp) protein (465aa)
Type I restriction modification DNA specificity domain protein Tax=Enterobacteriaceae RepID=J5V1W6_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KGE73284.1}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC230.;"
restriction endonuclease subunit S
RifSed_csp2_16ft_3_scaffold_3263_2
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1665..1904
DNA (240bp) protein (80aa)
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_3263_3
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1901..2284
DNA (384bp) protein (128aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AV67_9ARCH
putative nucleic acid-binding protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_3263_4
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

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2331..2810
DNA (480bp) protein (160aa)
Type-1 restriction enzyme R protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
hypothetical protein
Tax=RBG_13_Actinobacteria_63_9_curated
RifSed_csp2_16ft_3_scaffold_3263_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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2797..3114
DNA (318bp) protein (106aa)
hypothetical protein Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI0003760482
DNA polymerase, beta-like region
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3263_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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3101..3412
DNA (312bp) protein (104aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3263_7
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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3409..3645
DNA (237bp) protein (79aa)
Putative type III restriction-modification system, restriction subunit Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W921_UNCMA
putative type III restriction-modification system, restriction subunit
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3263_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3647..4804
DNA (1158bp) protein (386aa)
Uncharacterized protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XP84_METZD
Uncharacterized protein {ECO:0000313|EMBL:KCZ71991.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3263_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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5215..6207
DNA (993bp) protein (331aa)
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=PUR5_METBU
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3263_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6245..6790
DNA (546bp) protein (182aa)
Putative transcriptional regulator, ModE family Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQL9_METZD
Molybdenum-pterin binding domain {ECO:0000313|EMBL:KCZ73097.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative ModE family transcriptional regulator
RifSed_csp2_16ft_3_scaffold_3263_11
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

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6961..7341
DNA (381bp) protein (127aa)
Uncharacterized protein Tax=Desulfococcus multivorans DSM 2059 RepID=S7V773_DESML
Uncharacterized protein {ECO:0000313|EMBL:KJS50642.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
RifSed_csp2_16ft_3_scaffold_3263_12
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7387..10530
DNA (3144bp) protein (1048aa)
Uncharacterized protein Tax=Desulfococcus multivorans DSM 2059 RepID=S7V773_DESML
Uncharacterized protein {ECO:0000313|EMBL:KJS50642.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
DNA topoisomerase I
RifSed_csp2_16ft_3_scaffold_3263_13
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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10570..11529
DNA (960bp) protein (320aa)
UPI0003D1A60F related cluster Tax=unknown RepID=UPI0003D1A60F
Uncharacterized protein {ECO:0000313|EMBL:ETA67573.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus tindarius DSM 2278.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3263_14
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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11635..11805
DNA (171bp) protein (57aa)
ATPase Tax=Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) RepID=Q2FLG9_METHJ
ATPase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_3263_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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11933..12745
DNA (813bp) protein (271aa)
Extracellular solute-binding protein family 1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CJU8_DESK7
ABC transporter substrate-binding protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3263_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12732..13466
DNA (735bp) protein (245aa)
Binding-protein-dependent transport systems inner membrane component Tax=Haloterrigena limicola JCM 13563 RepID=M0CRT5_9EURY
ABC-type tungstate transport system, periplasmic component {ECO:0000313|EMBL:KCZ73099.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
tungstate transporter permease
RifSed_csp2_16ft_3_scaffold_3263_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13468..14202
DNA (735bp) protein (245aa)
ABC transporter, ATP-binding protein, putative Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AHF0_PYRYC
ABC-type phosphate transport system, ATPase component {ECO:0000313|EMBL:KCZ73100.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ABC transporter ATP-binding protein
RifSed_csp2_16ft_3_scaffold_3263_18
unknown

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comp(14219..14350)
DNA (132bp) protein (44aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_3263_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14482..15852
DNA (1371bp) protein (457aa)
Single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease RecJ Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46BP8_METBF
Single-stranded DNA-specific exonuclease {ECO:0000313|EMBL:KCZ73198.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_3263_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15853..16599)
DNA (747bp) protein (249aa)
Uncharacterized protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46BP9_METBF
Uncharacterized protein {ECO:0000313|EMBL:KCZ70284.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Transcriptional repressor of nif and glnA operons
RifSed_csp2_16ft_3_scaffold_3263_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16730..17650
DNA (921bp) protein (307aa)
Biotin synthase-related protein, radical SAM superfamily Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=Q5JEV3_THEKO
Biotin synthetase-like uncharacterized protein {ECO:0000313|EMBL:KCZ70984.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
biotin synthase
RifSed_csp2_16ft_3_scaffold_3263_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17647..18462
DNA (816bp) protein (272aa)
Peptidase family M23 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BWS5_ANAMD
Peptidase family M23 {ECO:0000313|EMBL:KCZ70983.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
peptidase family M23
RifSed_csp2_16ft_3_scaffold_3263_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18443..18919)
DNA (477bp) protein (159aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72744.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_3263_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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18974..19396
DNA (423bp) protein (141aa)
Probable glycine cleavage system H protein Tax=Pyrococcus abyssi RepID=GCSH_PYRAB
Probable glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
gcsH4; glycine cleavage system protein H
RifSed_csp2_16ft_3_scaffold_3263_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19479..20660
DNA (1182bp) protein (394aa)
Uncharacterized protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TQI8_METAC
Site-specific recombinase XerD {ECO:0000313|EMBL:KCZ71634.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
Displaying 25 items

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