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RifSed_csp2_16ft_3_scaffold_3331

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_3331_1
California sea lion adenovirus 1, Mastadenovirus, Viruses

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comp(3..416)
DNA (414bp) protein (138aa)
Predicted protein Tax=Pyrenophora tritici-repentis (strain Pt-1C-BFP) RepID=B2VW07_PYRTR
Fiber {ECO:0000313|EMBL:AIA22368.1}; species="Viruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; unclassified Mastadenovirus.;" source="California sea lion adenovirus 1.;"
FG-GAP repeat protein
RifSed_csp2_16ft_3_scaffold_3331_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(403..930)
DNA (528bp) protein (176aa)
ATPase, type IV secretory pathway VirB11 component like protein {ECO:0000313|EMBL:KCZ72585.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_3331_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(941..1138)
DNA (198bp) protein (66aa)
Uncharacterized protein Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7J759_METBM
Uncharacterized protein {ECO:0000313|EMBL:KCZ72586.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3331_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1140..1928)
DNA (789bp) protein (263aa)
Site-determining protein Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W6U6_UNCMA
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
chromosome partitioning ATPase
RifSed_csp2_16ft_3_scaffold_3331_trna_1
unknown

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2134..2205
DNA (72bp)
transferRNA Ala
RifSed_csp2_16ft_3_scaffold_3331_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2222..3676)
DNA (1455bp) protein (485aa)
Indolepyruvate oxidoreductase subunit IorA {ECO:0000256|PIRNR:PIRNR006439}; Short=IOR {ECO:0000256|PIRNR:PIRNR006439};; EC=1.2.7.8 {ECO:0000256|PIRNR:PIRNR006439};; Indolepyruvate ferredoxin oxidoreductase subunit alpha {ECO:0000256|PIRNR:PIRNR006439}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8)
Indolepyruvate ferredoxin oxidoreductase Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8E7_METEZ
RifSed_csp2_16ft_3_scaffold_3331_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3673..4557)
DNA (885bp) protein (295aa)
OB-fold nucleic acid binding domain protein Tax=Methanosarcina mazei RepID=M1Q0L8_METMZ
tRNA(Ile2) 2-agmatinylcytidine synthetase {ECO:0000313|EMBL:KCZ73256.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
OB-fold nucleic acid binding domain protein
RifSed_csp2_16ft_3_scaffold_3331_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4603..6441
DNA (1839bp) protein (613aa)
Archaeal serine protease Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BL57_9EURY
Archaeal serine protease {ECO:0000313|EMBL:KCZ73255.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Archaeal serine protease
RifSed_csp2_16ft_3_scaffold_3331_8
CG_Micra_06, Micraarchaeota, Archaea

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comp(6670..7884)
DNA (1215bp) protein (405aa)
sodium/hydrogen exchanger bin=AR5_curated_draft species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
putative Na(+)/H(+) antiporter
Tax=CG_Micra_06
RifSed_csp2_16ft_3_scaffold_3331_9
unknown

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8259..8510
DNA (252bp) protein (84aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_3331_10
unknown

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8507..8950
DNA (444bp) protein (148aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_3331_11
unknown

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comp(8819..9196)
DNA (378bp) protein (126aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_3331_12
Tolypothrix sp. PCC 7601, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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comp(9253..9900)
DNA (648bp) protein (216aa)
hypothetical protein Tax=Oscillatoria sp. PCC 10802 RepID=UPI0003450600
Uncharacterized protein {ECO:0000313|EMBL:EKF00178.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix sp. PCC 7601.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3331_13
unknown

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comp(9924..10070)
DNA (147bp) protein (49aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_3331_14
CG_Woesearch_03, Woesearchaeota, Archaea

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comp(10494..10895)
DNA (402bp) protein (134aa)
cat1; cationic amino acid transporter
Tax=CG_Woesearch_03
RifSed_csp2_16ft_3_scaffold_3331_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11002..13206
DNA (2205bp) protein (735aa)
Trehalose-phosphatase {ECO:0000313|EMBL:KCZ71868.1}; EC=2.4.1.15 {ECO:0000313|EMBL:KCZ71868.1};; EC=3.1.3.12 {ECO:0000313|EMBL:KCZ71868.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
transcriptional antiterminator Tax=Calescamantes bacterium SCGC AAA471-M6 RepID=UPI0003B65579
UDP-forming alpha,alpha-trehalose-phosphate synthase
RifSed_csp2_16ft_3_scaffold_3331_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13336..14586
DNA (1251bp) protein (417aa)
Transposase Tax=Methanolobus psychrophilus R15 RepID=K4MBW3_9EURY
Transposase, IS605 OrfB family, central region {ECO:0000313|EMBL:KCZ71763.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
transposase
RifSed_csp2_16ft_3_scaffold_3331_17
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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14601..16796
DNA (2196bp) protein (732aa)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
alpha amylase catalytic subunit
Tax=RBG_16_Deltaproteobacteria_47_11_curated
RifSed_csp2_16ft_3_scaffold_3331_18
CSP1_5_NC10, NC10, Bacteria

Not on your lists

16799..20110
DNA (3312bp) protein (1104aa)
trehalose synthase; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16] bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
trehalose synthase
Tax=CSP1_5_NC10
RifSed_csp2_16ft_3_scaffold_3331_19
Candidatus Jettenia caeni, Candidatus Jettenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

20112..22037
DNA (1926bp) protein (642aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae.;" source="planctomycete KSU-1.;"
1,4-alpha-glucan branching enzyme GlgB Tax=planctomycete KSU-1 RepID=I3IMF6_9PLAN
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase
RifSed_csp2_16ft_3_scaffold_3331_20
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

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22037..23836
DNA (1800bp) protein (600aa)
Malto-oligosyltrehalose trehalohydrolase Tax=planctomycete KSU-1 RepID=I3IMF3_9PLAN
malto-oligosyltrehalose trehalohydrolase
Tax=RBG_13_Nitrospirae_39_12_curated
RifSed_csp2_16ft_3_scaffold_3331_21
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23829..26108
DNA (2280bp) protein (760aa)
Glycoside hydrolase, family 57 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LKS9_SYNFM
glycoside hydrolase family protein
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
RifSed_csp2_16ft_3_scaffold_3331_22
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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comp(26085..26774)
DNA (690bp) protein (230aa)
Uncharacterized CRISPR-associated proteins (Cas6-like) Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I8P3_METCZ
hypothetical protein
Uncharacterized CRISPR-associated proteins (Cas6-like) {ECO:0000313|EMBL:AFC99947.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 /; HZ254).;"
Displaying 23 items

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