ggKbase home page

RifSed_csp2_16ft_3_scaffold_7415

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_7415_1
unknown

Not on your lists

comp(157..684)
DNA (528bp) protein (176aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_7415_2
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

986..2458
DNA (1473bp) protein (491aa)
Transposase Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12TS2_METBU
transposase
Transposase {ECO:0000313|EMBL:ABE53154.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 /; ACE-M).;"
RifSed_csp2_16ft_3_scaffold_7415_3
unknown

Not on your lists

comp(2464..3300)
DNA (837bp) protein (279aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_7415_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

3375..3764
DNA (390bp) protein (130aa)
Putative uncharacterized protein Tax=Methanoregula boonei (strain 6A8) RepID=A7I9G5_METB6
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_7415_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

3766..4614
DNA (849bp) protein (283aa)
Methanogenesis marker protein 8 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EBB8_METMS
methanogenesis marker protein 8
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_7415_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4655..5494
DNA (840bp) protein (280aa)
Proline dehydrogenase {ECO:0000313|EMBL:KCZ70759.1}; EC=1.5.5.2 {ECO:0000313|EMBL:KCZ70759.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Proline dehydrogenase Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KKF9_9ARCH
proline dehydrogenase
RifSed_csp2_16ft_3_scaffold_7415_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5542..6267
DNA (726bp) protein (242aa)
Cytochrome c-type biogenesis protein Tax=Natronobacterium gregoryi (strain ATCC 43098 / CCM 3738 / NCIMB 2189 / SP2) RepID=L0AM53_NATGS
Cytochrome c biogenesis protein {ECO:0000313|EMBL:KCZ72708.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
thiol:disulfide interchange protein
RifSed_csp2_16ft_3_scaffold_7415_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(6282..6467)
DNA (186bp) protein (62aa)
Uncharacterized protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPC8_METZD
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_7415_9
unknown

Not on your lists

6621..6776
DNA (156bp) protein (52aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_7415_10
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6831..7061
DNA (231bp) protein (77aa)
Tax=RBG_16_Deltaproteobacteria_64_85_curated
RifSed_csp2_16ft_3_scaffold_7415_11
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7243..8007
DNA (765bp) protein (255aa)
Putative GTPase Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KYZ9_METHD
putative GTPase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_7415_12
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8073..8282)
DNA (210bp) protein (70aa)
Uncharacterized protein Tax=Methanolobus psychrophilus R15 RepID=K4MEV3_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFV24465.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus psychrophilus R15.;"
RifSed_csp2_16ft_3_scaffold_7415_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8542..10350)
DNA (1809bp) protein (603aa)
Oligoendopeptidase F {ECO:0000313|EMBL:KCZ70286.1}; EC=3.4.24.- {ECO:0000313|EMBL:KCZ70286.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Oligoendopeptidase, pepF/M3 family Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LFN0_SYNFM
pepF/M3 family oligoendopeptidase
RifSed_csp2_16ft_3_scaffold_7415_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10483..10881
DNA (399bp) protein (133aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2DU48_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KCZ72748.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Blue (Type 1) copper protein
RifSed_csp2_16ft_3_scaffold_7415_15
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10924..11250)
DNA (327bp) protein (109aa)
Putative uncharacterized protein Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12YK0_METBU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE51476.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 /; ACE-M).;"
RifSed_csp2_16ft_3_scaffold_7415_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11401..11937
DNA (537bp) protein (179aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ70503.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Putative uncharacterized protein bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
RifSed_csp2_16ft_3_scaffold_7415_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11965..12384
DNA (420bp) protein (140aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72747.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_7415_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12397..12999
DNA (603bp) protein (201aa)
Protease subunit of ATP-dependent protease {ECO:0000313|EMBL:KCZ71553.1}; EC=3.4.21.92 {ECO:0000313|EMBL:KCZ71553.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ATP-dependent Clp protease proteolytic subunit Tax=Aminomonas paucivorans DSM 12260 RepID=E3D038_9BACT
ATP-dependent Clp protease, proteolytic subunit ClpP
RifSed_csp2_16ft_3_scaffold_7415_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13004..15784
DNA (2781bp) protein (927aa)
Aconitase {ECO:0000313|EMBL:KCZ71552.1}; EC=4.2.1.3 {ECO:0000313|EMBL:KCZ71552.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Aconitate hydratase 1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E9P0_METEZ
aconitate hydratase 1
RifSed_csp2_16ft_3_scaffold_7415_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15790..17157
DNA (1368bp) protein (456aa)
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:KCZ71551.1}; EC=1.2.1.16 {ECO:0000313|EMBL:KCZ71551.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
succinate-semialdehyde dehydrogenase (NAD(P)+) (EC:1.2.1.16)
NAD-dependent aldehyde dehydrogenase Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12ZE0_METBU
RifSed_csp2_16ft_3_scaffold_7415_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17159..18388
DNA (1230bp) protein (410aa)
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase {ECO:0000313|EMBL:KCZ71550.1}; EC=2.2.1.6 {ECO:0000313|EMBL:KCZ71550.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Thiamine pyrophosphate protein domain protein TPP-binding protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EAQ6_METEZ
thiamine pyrophosphate domain-containing TPP-binding protein
RifSed_csp2_16ft_3_scaffold_7415_22
Methanosarcina sp. Kolksee, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18739..20130)
DNA (1392bp) protein (464aa)
Transposase Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TJI6_METAC
ISBma2, transposase
ISBma2, transposase {ECO:0000313|EMBL:AKB49201.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. Kolksee.;"
Displaying 22 items

View Taxonomy