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RifSed_csp2_16ft_3_scaffold_6589

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_6589_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(111..1025)
DNA (915bp) protein (305aa)
Conserved hypothetical extracellular protein Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4C0S6_METCG
Uncharacterized protein {ECO:0000313|EMBL:KCZ72706.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_6589_2
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(1063..2316)
DNA (1254bp) protein (418aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000382730D
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_6589_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(2366..3580)
DNA (1215bp) protein (405aa)
Uncharacterized protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TL68_METAC
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_6589_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(3577..4242)
DNA (666bp) protein (222aa)
ABC transporter related protein Tax=Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) RepID=E4S5E3_CALKI
ABC transporter-like protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_6589_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(4259..4657)
DNA (399bp) protein (133aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_6589_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(4748..5257)
DNA (510bp) protein (170aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037CAC41
MarR family regulator
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_6589_7
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5266..5712)
DNA (447bp) protein (149aa)
Transcriptional regulator Tax=Thermococcus litoralis DSM 5473 RepID=H3ZR38_THELI
transcriptional regulator
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_6589_8
RBG_13_RIF_OD1_07_37_56_curated, RIF-OD1-7, Parcubacteria, Bacteria

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5808..6623
DNA (816bp) protein (272aa)
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein bin=PER_GWA2_38_35 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
ABC transporter-like protein
Tax=RBG_13_RIF_OD1_07_37_56_curated
RifSed_csp2_16ft_3_scaffold_6589_9
RIFOXYD2_FULL_PER_ii_58_15_curated, PER-ii, Bacteria

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6623..7372
DNA (750bp) protein (250aa)
multidrug ABC transporter permease; K09686 antibiotic transport system permease protein bin=PER_GWA2_38_35 species=PER_GWA2_38_35 genus=PER_GWA2_38_35 taxon_order=PER_GWA2_38_35 taxon_class=PER_GWA2_38_35 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
multidrug ABC transporter, permease protein
Tax=RIFOXYD2_FULL_PER_ii_58_15_curated
RifSed_csp2_16ft_3_scaffold_6589_10
unknown

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7765..7902
DNA (138bp) protein (46aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_6589_11
unknown

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7899..8021
DNA (123bp) protein (41aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_6589_12
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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8150..9262
DNA (1113bp) protein (371aa)
UPI0003D1A582 related cluster Tax=unknown RepID=UPI0003D1A582
Uncharacterized protein {ECO:0000313|EMBL:ETA68538.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus tindarius DSM 2278.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_6589_13
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9259..10431
DNA (1173bp) protein (391aa)
ABC transporter permease protein Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8Q0P5_METMA
ABC transporter permease
Lipoprotein releasing system transmembrane protein LolC {ECO:0000313|EMBL:AKB61119.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei SarPi.;"
RifSed_csp2_16ft_3_scaffold_6589_14
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10495..11535
DNA (1041bp) protein (347aa)
Uncharacterized protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465X4_METBF
hypothetical protein
ABC transporter, permease protein {ECO:0000313|EMBL:AKB50542.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri str. Wiesmoor.;"
RifSed_csp2_16ft_3_scaffold_6589_15
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11528..12220
DNA (693bp) protein (231aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus tindarius DSM 2278.;"
UPI0003D1C813 related cluster Tax=unknown RepID=UPI0003D1C813
ABC transporter
RifSed_csp2_16ft_3_scaffold_6589_16
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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12460..14040
DNA (1581bp) protein (527aa)
N-6 DNA methylase bin=GWF2_Ignavibacteria_35_20 species=Anabaena variabilis genus=Anabaena taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
N-6 DNA methylase
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
Displaying 16 items

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