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RifSed_csp2_16ft_3_scaffold_4822

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_4822_1
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2..805)
DNA (804bp) protein (268aa)
Putative uncharacterized protein Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D5S0_MYXXD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF88485.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus xanthus (strain DK 1622).;"
RifSed_csp2_16ft_3_scaffold_4822_2
GWB2_Planctomycetes_41_19_curated, Brocadiales, Planctomycetes, Bacteria

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comp(792..1730)
DNA (939bp) protein (313aa)
Electron transfer flavoprotein alpha subunit bin=GWA2_Planctomycete_KSU_39_15 species=Thermoplasmatales archaeon SCGC AB-539-C06 genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
electron transfer flavoprotein subunit alpha
Tax=GWB2_Planctomycetes_41_19_curated
RifSed_csp2_16ft_3_scaffold_4822_3
RLO_Planctomycetes_39_13, Planctomycetes, Bacteria

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comp(1739..2446)
DNA (708bp) protein (236aa)
Electron transfer flavoprotein beta-subunit bin=GWA2_Planctomycete_KSU_39_15 species=Thermoplasmatales archaeon SCGC AB-539-C06 genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
electron transfer flavoprotein subunit beta
Tax=RIFCSPLOWO2_12_FULL_Planctomycetes_39_13_curated
RifSed_csp2_16ft_3_scaffold_4822_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2462..3676)
DNA (1215bp) protein (405aa)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KCZ71900.1}; EC=1.3.8.7 {ECO:0000313|EMBL:KCZ71900.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Acyl-CoA dehydrogenase domain protein bin=GWC2_Planctomycete_KSU_39_26 species=unknown genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
acyl-CoA dehydrogenase domain-containing protein
RifSed_csp2_16ft_3_scaffold_4822_5
unknown

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3993..4466
DNA (474bp) protein (158aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4822_6
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

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4463..5953
DNA (1491bp) protein (497aa)
gtfF; polysaccharide synthase bin=ACD79 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
glycosyl transferase
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
RifSed_csp2_16ft_3_scaffold_4822_7
RIFOXYB2_FULL_Elusimicrobia_50_12_curated, Elusimicrobia, Bacteria

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6067..6927
DNA (861bp) protein (287aa)
Tax=RIFOXYB2_FULL_Elusimicrobia_50_12_curated
RifSed_csp2_16ft_3_scaffold_4822_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7134..7694)
DNA (561bp) protein (187aa)
Putative uncharacterized protein Tax=uncultured archaeon RepID=D1JIX0_9ARCH
Transposase {ECO:0000313|EMBL:KCZ70366.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_4822_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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7775..8815
DNA (1041bp) protein (347aa)
Putative uncharacterized protein Tax=uncultured archaeon RepID=D1JBC9_9ARCH
Selenocysteine-specific translation elongation factor {ECO:0000313|EMBL:KCZ73528.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
elongation factor Tu domain-containing protein
RifSed_csp2_16ft_3_scaffold_4822_10
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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8838..9617
DNA (780bp) protein (260aa)
Inositol monophosphatase Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E811_METEZ
inositol monophosphatase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4822_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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9624..10445
DNA (822bp) protein (274aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Probable inorganic polyphosphate/ATP-NAD kinase Tax=Methanolobus psychrophilus R15 RepID=K4MIW7_9EURY
NAD(+) kinase
RifSed_csp2_16ft_3_scaffold_4822_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(10461..11087)
DNA (627bp) protein (209aa)
Precorrin isomerase {ECO:0000313|EMBL:KCZ71789.1}; EC=5.4.99.61 {ECO:0000313|EMBL:KCZ71789.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Precorrin-8X methylmutase CbiC/CobH Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E616_METEZ
precorrin-8X methylmutase CbiC/CobH
RifSed_csp2_16ft_3_scaffold_4822_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(11077..11838)
DNA (762bp) protein (254aa)
Precorrin-3B C17-methyltransferase {ECO:0000313|EMBL:KCZ71788.1}; EC=2.1.1.131 {ECO:0000313|EMBL:KCZ71788.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Precorrin-3B C17-methyltransferase Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNA4_METZD
precorrin-3B C(17)-methyltransferase
RifSed_csp2_16ft_3_scaffold_4822_14
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(11813..12679)
DNA (867bp) protein (289aa)
Cobalamin biosynthesis protein CbiG Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAR2_METCZ
cbiG; Cobalamin biosynthesis protein CbiG
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4822_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(12672..13994)
DNA (1323bp) protein (441aa)
Precorrin-4 C11-methyltransferase Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L1T7_METHD
Precorrin-4 C11-methyltransferase {ECO:0000313|EMBL:KCZ71786.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
precorrin-4 C11-methyltransferase
RifSed_csp2_16ft_3_scaffold_4822_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(13985..14509)
DNA (525bp) protein (175aa)
Precorrin-6Y C5,15-methyltransferase (Decarboxylating), CbiT subunit {ECO:0000313|EMBL:KCZ71785.1}; EC=2.1.1.196 {ECO:0000313|EMBL:KCZ71785.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating] Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNA1_METZD
precorrin-6y C5,15-methyltransferase subunit CbiT
RifSed_csp2_16ft_3_scaffold_4822_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14662..15009
DNA (348bp) protein (116aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71970.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_4822_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(15036..15560)
DNA (525bp) protein (175aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
leuD; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=LEUD_METMA
RifSed_csp2_16ft_3_scaffold_4822_19

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15580..15780
DNA (201bp) protein (67aa)
Putative uncharacterized protein Tax=uncultured archaeon RepID=D1JBH0_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:CBH39450.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
RifSed_csp2_16ft_3_scaffold_4822_20
Methanoculleus marisnigri, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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16161..16562
DNA (402bp) protein (134aa)
DNA polymerase, beta domain protein region Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CSX8_METMJ
DNA polymerase beta subunit
DNA polymerase, beta domain protein region {ECO:0000313|EMBL:ABN56478.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoculleus.;" source="Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1).;"
RifSed_csp2_16ft_3_scaffold_4822_21

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16559..16975
DNA (417bp) protein (139aa)
Putative uncharacterized protein Tax=uncultured archaeon RepID=D1JF47_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:CBH37155.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4822_22
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(17504..18100)
DNA (597bp) protein (199aa)
Transposase Tax=Salimicrobium sp. MJ3 RepID=K2G6J5_9BACI
Mobile element protein {ECO:0000313|EMBL:AKB32251.1}; Transposase IS116/IS110/IS902 family protein {ECO:0000313|EMBL:AKB33164.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina siciliae HI350.;"
transposase
RifSed_csp2_16ft_3_scaffold_4822_23
unknown

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18165..18251
DNA (87bp) protein (29aa)

This feature has no annotations

Displaying 23 items

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