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RifSed_csp2_16ft_3_scaffold_4833

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_4833_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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96..800
DNA (705bp) protein (235aa)
Phosphoribosyltransferase Tax=Methanolobus psychrophilus R15 RepID=K4MNH5_9EURY
Putative phosphoribosyltransferase {ECO:0000313|EMBL:KCZ72728.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
phosphoribosyltransferase
RifSed_csp2_16ft_3_scaffold_4833_2
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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805..1659
DNA (855bp) protein (285aa)
S-methyl-5'-thioadenosine phosphorylase Tax=Methanolobus psychrophilus R15 RepID=K4MC73_9EURY
methylthioadenosine phosphorylase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4833_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2079..2726
DNA (648bp) protein (216aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=KAD_METBF
RifSed_csp2_16ft_3_scaffold_4833_4
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2719..3318
DNA (600bp) protein (200aa)
Uncharacterized protein Tax=Methanolobus psychrophilus R15 RepID=K4MD47_9EURY
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4833_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3319..3840
DNA (522bp) protein (174aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00239, ECO:0000256|SAAS:SAAS00054797}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00239};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00239, ECO:0000256|SAAS:SAAS00054803};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00239}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
cmk; cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase Tax=Uncultured methanogenic archaeon RC-I RepID=KCY_UNCMA
RifSed_csp2_16ft_3_scaffold_4833_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3837..4832
DNA (996bp) protein (332aa)
Probable tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01081}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01081}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01081}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Probable tRNA pseudouridine synthase B Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WMQ1_METH6
putative tRNA pseudouridine synthase B
RifSed_csp2_16ft_3_scaffold_4833_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(4849..5511)
DNA (663bp) protein (221aa)
O-methyltransferase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UN21_MYXSD
Putative O-methyltransferase {ECO:0000313|EMBL:KCZ70285.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
caffeoyl-CoA O-methyltransferase
RifSed_csp2_16ft_3_scaffold_4833_trna_1
unknown

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5604..5689
DNA (86bp)
transferRNA Ser
RifSed_csp2_16ft_3_scaffold_4833_8
unknown

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5744..5893
DNA (150bp) protein (50aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4833_9
unknown

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comp(6228..6323)
DNA (96bp) protein (32aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4833_10
RBG_16_Archaea_50_20_curated, Archaea

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comp(6342..6815)
DNA (474bp) protein (158aa)
Uncharacterized protein bin=GWF2_Ignavibacteria_35_20 species=gamma proteobacterium HIMB55 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
beta-lactamase
Tax=RBG_16_Archaea_50_20_curated
RifSed_csp2_16ft_3_scaffold_4833_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(6973..7968)
DNA (996bp) protein (332aa)
Putative uncharacterized protein Tax=uncultured archaeon RepID=D1J916_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KCZ70716.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4833_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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8843..9322
DNA (480bp) protein (160aa)
Uncharacterized protein Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S189_FERPA
Uncharacterized protein {ECO:0000313|EMBL:KCZ72435.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4833_13
Methanocella paludicola, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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9332..9940
DNA (609bp) protein (203aa)
Uncharacterized protein Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YZG6_METPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI61838.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 /; SANAE).;"
RifSed_csp2_16ft_3_scaffold_4833_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10326..10508)
DNA (183bp) protein (61aa)
Uncharacterized protein Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KXV7_METHD
Uncharacterized protein {ECO:0000313|EMBL:KCZ72642.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4833_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(10536..10748)
DNA (213bp) protein (71aa)
TRAM-domain protein Tax=Methanolobus psychrophilus R15 RepID=K4MJA4_9EURY
Putative RNA-binding protein, contains TRAM domain {ECO:0000313|EMBL:KCZ71833.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
TRAM-domain protein
RifSed_csp2_16ft_3_scaffold_4833_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(10951..11502)
DNA (552bp) protein (184aa)
Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase {ECO:0000313|EMBL:KCZ72644.1}; EC=4.1.2.17 {ECO:0000313|EMBL:KCZ72644.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Class II aldolase/adducin family protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EBP8_METEZ
class II aldolase/adducin family protein
RifSed_csp2_16ft_3_scaffold_4833_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11506..11952)
DNA (447bp) protein (149aa)
DNA ligase D-like 3'-phosphoesterase domain-containing protein {ECO:0000313|EMBL:KCZ72645.1}; EC=6.5.1.1 {ECO:0000313|EMBL:KCZ72645.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
DNA ligase D, 3'-phosphoesterase domain protein Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAR9_METMS
DNA ligase D, 3'-phosphoesterase domain protein
RifSed_csp2_16ft_3_scaffold_4833_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(11956..12591)
DNA (636bp) protein (212aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
endonuclease III (EC:4.2.99.18)
endonuclease III (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] bin=GW2011_AR10_complete species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
RifSed_csp2_16ft_3_scaffold_4833_19
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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12723..12983
DNA (261bp) protein (87aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4833_20
unknown

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13136..13375
DNA (240bp) protein (80aa)
Putative uncharacterized protein Tax=Dictyostelium purpureum RepID=F0ZZN6_DICPU
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4833_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13449..14552)
DNA (1104bp) protein (368aa)
Uncharacterized protein Tax=Flavobacterium enshiense DK69 RepID=V6S8V2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KCZ73237.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4833_22
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(14549..15709)
DNA (1161bp) protein (387aa)
Glucose/sorbosone dehydrogenase Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KVQ5_METHD
glucose/sorbosone dehydrogenase
Glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:AGB49522.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 /; DMS1).;"
RifSed_csp2_16ft_3_scaffold_4833_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(15722..16111)
DNA (390bp) protein (130aa)
Uncharacterized protein Tax=Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134) RepID=I3Z7T7_BELBD bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:KCZ73436.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4833_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(16140..16526)
DNA (387bp) protein (129aa)
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase {ECO:0000313|EMBL:KCZ73054.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Putative uncharacterized protein bin=GWA2_Elusimicrobia_56_46 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4833_25

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comp(16528..16863)
DNA (336bp) protein (112aa)
Predicted ferredoxin:thioredoxin reductase subunit Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W0R6_UNCMA
Uncharacterized protein {ECO:0000313|EMBL:KKM80341.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ferredoxin:thioredoxin reductase subunit
RifSed_csp2_16ft_3_scaffold_4833_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(16860..17123)
DNA (264bp) protein (88aa)
Glutaredoxin Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EAM6_METEZ
Glutaredoxin-like protein {ECO:0000313|EMBL:KCZ73048.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
glutaredoxin
Displaying 27 items

View Taxonomy