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RifSed_csp2_16ft_3_scaffold_4863

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_4863_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3..725
DNA (723bp) protein (241aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Malate dehydrogenase (EC:1.1.1.37)
Malate dehydrogenase Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=MDH_METBF
RifSed_csp2_16ft_3_scaffold_4863_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1377..1658
DNA (282bp) protein (94aa)
Uncharacterized protein Tax=Microcystis aeruginosa PCC 9717 RepID=I4FU74_MICAE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RifSed_csp2_16ft_3_scaffold_4863_3
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

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1655..1924
DNA (270bp) protein (90aa)
Putative uncharacterized protein Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YIJ9_THEYD
hypothetical protein
Tax=RBG_13_Nitrospirae_41_22_curated
RifSed_csp2_16ft_3_scaffold_4863_4
Caldithrix abyssi, Caldithrix, Bacteria

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1914..2132
DNA (219bp) protein (73aa)
Uncharacterized protein family UPF0150 Tax=Caldithrix abyssi DSM 13497 RepID=H1XS65_9BACT
Uncharacterized protein family UPF0150 {ECO:0000313|EMBL:EHO40229.1}; species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4863_5
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2125..2343
DNA (219bp) protein (73aa)
Putative uncharacterized protein Tax=uncultured archaeon GZfos14B8 RepID=Q64E52_9ARCH
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4863_6
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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2654..2941
DNA (288bp) protein (96aa)
hypothetical protein Tax=candidate division OP9 bacterium OP9-cSCG RepID=UPI00036B6F8A
hypothetical protein
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
RifSed_csp2_16ft_3_scaffold_4863_7
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

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2910..3128
DNA (219bp) protein (73aa)
Uncharacterized protein Tax=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) RepID=C5A6L8_THEGJ
hypothetical protein
Tax=RBG_16_RIF03_38_10_curated
RifSed_csp2_16ft_3_scaffold_4863_8
unknown

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3354..3533
DNA (180bp) protein (60aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4863_9
unknown

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3538..3627
DNA (90bp) protein (30aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4863_10
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3757..3954
DNA (198bp) protein (66aa)
Uncharacterized protein Tax=Microcystis aeruginosa PCC 9807 RepID=I4HE90_MICAE
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4863_11
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(4058..4423)
DNA (366bp) protein (122aa)
Phosphoribosyl-AMP cyclohydrolase Tax=uncultured archaeon RepID=Q2Y4F9_9ARCH
phosphoribosyl-AMP cyclohydrolase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4863_12
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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4479..6410
DNA (1932bp) protein (644aa)
Putative aminopeptidase bin=bin3_NC10 species=Methanosaeta harundinacea genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin3_NC10 organism_group=NC10
Putative aminopeptidase
Tax=RBG_13_Bathyarchaeota_38_9_curated
RifSed_csp2_16ft_3_scaffold_4863_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6462..6695
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ70447.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_4863_14
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(6709..8040)
DNA (1332bp) protein (444aa)
Periplasmic copper-binding Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GK68_METPE
periplasmic copper-binding protein
Periplasmic copper-binding {ECO:0000313|EMBL:ACL17139.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;" source="Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c).;"
RifSed_csp2_16ft_3_scaffold_4863_15
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(8149..9096)
DNA (948bp) protein (316aa)
UniRef90_I7HP80 Ca2+/Na+ antiporter Tax=Legionella pneumophila subsp. pneumophila RepID=I7HP80_LEGPN bin=RAAC39 species=Legionella pneumophila genus=Legionella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RAAC39 organism_group=Ignavibacteria
Ca2+/Na+ antiporter
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
RifSed_csp2_16ft_3_scaffold_4863_16

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comp(9093..9413)
DNA (321bp) protein (107aa)
Putative uncharacterized protein Tax=uncultured archaeon RepID=D1J9U1_9ARCH
Marine sediment metagenome DNA, contig: S01H4_S00869 {ECO:0000313|EMBL:GAG76483.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transcriptional regulator, PadR family
RifSed_csp2_16ft_3_scaffold_4863_17
Archaeoglobus veneficus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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comp(9479..10132)
DNA (654bp) protein (218aa)
Putative uncharacterized protein Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KPP7_ARCVS
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEA47575.1}; species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus veneficus (strain DSM 11195 / SNP6).;"
RifSed_csp2_16ft_3_scaffold_4863_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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10442..11227
DNA (786bp) protein (262aa)
Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000313|EMBL:KCZ71180.1}; EC=6.3.5.3 {ECO:0000313|EMBL:KCZ71180.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
purQ; phosphoribosylformylglycinamidine synthase subunit I (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase subunit I Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I8R0_METCZ
RifSed_csp2_16ft_3_scaffold_4863_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(11224..11790)
DNA (567bp) protein (189aa)
Pneumococcal surface protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TP95_METAC
Uncharacterized protein {ECO:0000313|EMBL:KCZ71181.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
pspA; surface protein
RifSed_csp2_16ft_3_scaffold_4863_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11884..12483)
DNA (600bp) protein (200aa)
Uncharacterized protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46AS0_METBF
Uncharacterized protein {ECO:0000313|EMBL:KCZ71181.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4863_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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12574..13842
DNA (1269bp) protein (423aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Probable 3-phosphoshikimate 1-carboxyvinyltransferase Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XL14_METZD
3-phosphoshikimate 1-carboxyvinyltransferase
RifSed_csp2_16ft_3_scaffold_4863_22
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13857..15287)
DNA (1431bp) protein (477aa)
prpD; 2-methylcitrate dehydratase (EC:4.2.1.79)
2-methylcitrate dehydratase bin=GWC2_Geobacteraceae_55_20 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
Tax=GWC2_Geobacteraceae_55_20_curated
RifSed_csp2_16ft_3_scaffold_4863_23
Gammaproteobacteria bacterium MFB021, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15322..16458)
DNA (1137bp) protein (379aa)
methylcitrate synthase (EC:2.3.3.5)
Citrate synthase Tax=Pseudomonas stutzeri DSM 10701 RepID=I6Z5B1_PSEST
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MFB021.;"
RifSed_csp2_16ft_3_scaffold_4863_24
Enterobacteriaceae bacterium strain FGI 57, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16418..17119)
DNA (702bp) protein (234aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae.;" source="Enterobacteriaceae bacterium (strain FGI 57).;"
Methylisocitrate lyase Tax=Enterobacteriaceae bacterium (strain FGI 57) RepID=L0M1S8_ENTBF
methylisocitrate lyase
Displaying 24 items

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