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RifSed_csp2_16ft_3_scaffold_5753

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_5753_1
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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2..187
DNA (186bp) protein (62aa)
Isoprenylcysteine carboxyl methyltransferase bin=GWA2_OP3_52_12 species=Paenibacillus sp. oral taxon 786 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
protein-S-isoprenylcysteine methyltransferase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5753_2
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

184..987
DNA (804bp) protein (268aa)
Cytochrome oxidase subunit I-like protein Tax=Methanosarcina mazei RepID=M1QIN7_METMZ
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5753_3
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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990..1169
DNA (180bp) protein (60aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_5753_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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1175..2014
DNA (840bp) protein (280aa)
Uncharacterized protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPS4_METZD
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5753_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2267..2704
DNA (438bp) protein (146aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72767.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_5753_6
Ferroglobus placidus, Ferroglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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2813..3316
DNA (504bp) protein (168aa)
DNA polymerase beta domain protein region Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S255_FERPA
DNA polymerase subunit beta
DNA polymerase beta domain protein region {ECO:0000313|EMBL:ADC66546.1}; species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Ferroglobus.;" source="Ferroglobus placidus (strain DSM 10642 / AEDII12DO).;"
RifSed_csp2_16ft_3_scaffold_5753_7
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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3313..3636
DNA (324bp) protein (108aa)
hypothetical protein Tax=candidate division YNPFFA RepID=UPI0003720A4F
HEPN domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5753_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3561..4163)
DNA (603bp) protein (201aa)
Lrp/AsnC family transcription regulator Tax=Haloferax mucosum ATCC BAA-1512 RepID=M0I291_9EURY
Transcriptional regulator {ECO:0000313|EMBL:KCZ72985.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
lrp; Lrp/AsnC family transcription regulator
RifSed_csp2_16ft_3_scaffold_5753_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4239..5234)
DNA (996bp) protein (332aa)
Radical SAM domain protein Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RXY0_THEPD
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:KCZ72907.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
radical SAM domain-containing protein
RifSed_csp2_16ft_3_scaffold_5753_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5221..5826)
DNA (606bp) protein (202aa)
Putative endonuclease III-like protein {ECO:0000313|EMBL:KCZ72908.1}; EC=3.2.2.- {ECO:0000313|EMBL:KCZ72908.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
DNA-3-methyladenine glycosylase III (EC:3.2.2.-)
DNA-3-methyladenine glycosylase III Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E890_METMS
RifSed_csp2_16ft_3_scaffold_5753_11
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5823..6479)
DNA (657bp) protein (219aa)
NADPH-dependent F420 reductase
NADPH-dependent F420 reductase; K06988 bin=bin1_lowGC species=Methanocella conradii genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_5753_12
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6476..7399)
DNA (924bp) protein (308aa)
Glycosyl transferase family 2 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XKV9_METZD
family 2 glycosyl transferase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_5753_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7444..8091)
DNA (648bp) protein (216aa)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
demethylmenaquinone methyltransferase (EC:2.1.1.-)
Demethylmenaquinone methyltransferase Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3Q9_9BACT
RifSed_csp2_16ft_3_scaffold_5753_14
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

8207..9544
DNA (1338bp) protein (446aa)
Adenylosuccinate lyase Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQJ6_METZD
adenylosuccinate lyase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5753_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

9561..10013
DNA (453bp) protein (151aa)
GCN5-related N-acetyltransferase Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XL74_METZD
N-acetyltransferase GCN5
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5753_16
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(10018..10314)
DNA (297bp) protein (99aa)
Uncharacterized protein Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L079_METHD
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5753_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10304..10741)
DNA (438bp) protein (146aa)
Formylmethanofuran dehydrogenase subunit D {ECO:0000313|EMBL:KCZ71884.1}; EC=1.2.99.5 {ECO:0000313|EMBL:KCZ71884.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Molybdopterin dinucleotide-binding region Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E9L5_METEZ
molybdopterin dinucleotide-binding region
RifSed_csp2_16ft_3_scaffold_5753_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10741..11952)
DNA (1212bp) protein (404aa)
Formylmethanofuran dehydrogenase, subunit B {ECO:0000313|EMBL:KCZ71885.1}; EC=1.2.99.5 {ECO:0000313|EMBL:KCZ71885.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Formylmethanofuran dehydrogenase, subunit B Tax=Methanolobus psychrophilus R15 RepID=K4MU48_9EURY
formylmethanofuran dehydrogenase, subunit B
RifSed_csp2_16ft_3_scaffold_5753_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11962..12420)
DNA (459bp) protein (153aa)
CO dehydrogenase/acetyl-CoA synthase gamma subunit (Corrinoid Fe-S protein) {ECO:0000313|EMBL:KCZ71886.1}; EC=1.2.99.5 {ECO:0000313|EMBL:KCZ71886.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
formylmethanofuran dehydrogenase, subunit G (EC:1.2.99.5)
UPI0003D1B463 related cluster Tax=unknown RepID=UPI0003D1B463
RifSed_csp2_16ft_3_scaffold_5753_20
GWA2_OD1_49_19_partial, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12462..13325)
DNA (864bp) protein (288aa)
EamA-like transporter family Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HH94_METFS
Uncharacterized protein {ECO:0000313|EMBL:KKW09085.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Kaiserbacteria) bacterium GW2011_GWA2_49_19.;"
EamA-like transporter family
RifSed_csp2_16ft_3_scaffold_5753_21
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13476..13880
DNA (405bp) protein (135aa)
Copper binding protein Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z2J1_METPS
copper binding protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_5753_22
unknown

Not on your lists

13960..14109
DNA (150bp) protein (50aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_5753_23
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(14158..14613)
DNA (456bp) protein (152aa)
Small heat shock protein Tax=Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) RepID=I0GI55_CALEA
small heat shock protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5753_24
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(14706..15224)
DNA (519bp) protein (173aa)
Coenzyme F390 synthetase Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZT5_METHD
coenzyme F390 synthetase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5753_25
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15172..15357)
DNA (186bp) protein (62aa)
Coenzyme F390 synthetase I Tax=Methanolobus psychrophilus R15 RepID=K4MSW0_9EURY
Coenzyme F390 synthetase {ECO:0000313|EMBL:KGK98665.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides methylutens.;"
coenzyme F390 synthetase I
RifSed_csp2_16ft_3_scaffold_5753_26
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(15354..15734)
DNA (381bp) protein (127aa)
Phenylacetyl-CoA ligase Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TIR8_METAC
phenylacetyl-CoA ligase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5753_27
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(15677..16183)
DNA (507bp) protein (169aa)
Uncharacterized protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TIS3_METAC
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying 27 items

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