ggKbase home page

RifSed_csp2_16ft_3_scaffold_15659

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_15659_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2..676
DNA (675bp) protein (225aa)
UPI0003D1BAE5 related cluster Tax=unknown RepID=UPI0003D1BAE5
Uncharacterized protein {ECO:0000313|EMBL:KCZ72813.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
KP-43 peptidase
RifSed_csp2_16ft_3_scaffold_15659_2
unknown

Not on your lists

1198..1521
DNA (324bp) protein (108aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_15659_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1614..1904
DNA (291bp) protein (97aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C Tax=Methanolobus psychrophilus R15 RepID=K4MDN6_9EURY
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C
RifSed_csp2_16ft_3_scaffold_15659_4
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1909..3330
DNA (1422bp) protein (474aa)
UPI0003D1A361 related cluster Tax=unknown RepID=UPI0003D1A361
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_15659_5
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3330..4847
DNA (1518bp) protein (506aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E8H1_METMS
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_15659_6
Methanofollis liminatans, Methanofollis, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5316..5591
DNA (276bp) protein (92aa)
Uncharacterized protein Tax=Methanofollis liminatans DSM 4140 RepID=J1L116_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJG06707.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanofollis.;" source="Methanofollis liminatans DSM 4140.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_15659_7
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

5592..5924
DNA (333bp) protein (111aa)
Putative nucleic acid-binding protein, contains PIN domain Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BCA9_9EURY
putative nucleic acid-binding protein, contains PIN domain
Tax=S_Thermoanaerobacterales_50_218
RifSed_csp2_16ft_3_scaffold_15659_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6205..6726
DNA (522bp) protein (174aa)
Peroxiredoxin {ECO:0000313|EMBL:KCZ71418.1}; EC=1.11.1.15 {ECO:0000313|EMBL:KCZ71418.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Peroxiredoxin (EC:1.11.1.15)
Alkyl hydroperoxide reductase bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
RifSed_csp2_16ft_3_scaffold_15659_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

6690..7583
DNA (894bp) protein (298aa)
lipoic acid synthetase (EC:2.8.1.8)
Probable lipoyl synthase Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2S0S5_HALTV
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_15659_10
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

7991..8185
DNA (195bp) protein (65aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-539-C06.;"
GDP-L-fucose synthase Tax=unclassified Thermoplasmatales RepID=M7TBZ0_9EURY
putative GDP-L-fucose synthase
RifSed_csp2_16ft_3_scaffold_15659_11
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8160..8789
DNA (630bp) protein (210aa)
Similar to GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase/4-reductase (GDP-fucose synthetase) bin=GWC2_Deltaproteobacteria_55_46 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
nucleoside-diphosphate-sugar epimerase
Tax=GWB2_Deltaproteobacteria_55_19_curated
RifSed_csp2_16ft_3_scaffold_15659_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8942..9199
DNA (258bp) protein (86aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72163.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Displaying 12 items

View Taxonomy