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RifSed_csp2_16ft_3_scaffold_10522

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_10522_1
R_WOR_2_52_10, WOR-2, Bacteria

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2..319
DNA (318bp) protein (106aa)
Putative transposase Tax=planctomycete KSU-1 RepID=I3IRH7_9PLAN
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_52_10_curated
RifSed_csp2_16ft_3_scaffold_10522_2
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(457..1350)
DNA (894bp) protein (298aa)
Transposase DDE domain protein Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I6R4_METCZ
tnp-7; transposase DDE domain-containing protein
Tax=BJP_IG2158_Thermoplasmatales_53_16
RifSed_csp2_16ft_3_scaffold_10522_3
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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1388..1543
DNA (156bp) protein (52aa)
Transposase Tax=uncultured archaeon RepID=G3C949_9ARCH
Tax=BJP_IG2158_Thermoplasmatales_53_16
RifSed_csp2_16ft_3_scaffold_10522_4
unknown

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1613..3736
DNA (2124bp) protein (708aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_10522_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3899..4336)
DNA (438bp) protein (146aa)
Uncharacterized protein Tax=Sulfolobus islandicus RepID=Q5W2Q5_SULIS
Transposase {ECO:0000313|EMBL:KCZ70366.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
IS200/IS605 family OrfA transposase
RifSed_csp2_16ft_3_scaffold_10522_6
unknown

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comp(4408..4662)
DNA (255bp) protein (85aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_10522_7
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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4812..6329
DNA (1518bp) protein (506aa)
AMP phosphorylase (EC:2.4.2.4)
AMP phosphorylase Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XK77_METZD
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_10522_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(6331..6675)
DNA (345bp) protein (115aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_10522_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(6712..7626)
DNA (915bp) protein (305aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1BE6F related cluster Tax=unknown RepID=UPI0003D1BE6F
ribonuclease Z
RifSed_csp2_16ft_3_scaffold_10522_10
unknown

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comp(7660..8262)
DNA (603bp) protein (201aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_10522_trna_1
unknown

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comp(8316..8426)
DNA (111bp)
transferRNA Tyr
RifSed_csp2_16ft_3_scaffold_10522_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(8475..9734)
DNA (1260bp) protein (420aa)
Nodulation efficiency protein NfeD Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E8D2_METMS
Membrane-bound serine protease (ClpP class) {ECO:0000313|EMBL:KCZ73196.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Nodulation efficiency protein NfeD
RifSed_csp2_16ft_3_scaffold_10522_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(9731..10522)
DNA (792bp) protein (264aa)
SPFH domain, Band 7 family protein Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B9X2_METTP
Membrane protease subunit, stomatin/prohibitin {ECO:0000313|EMBL:KCZ73197.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
band 7 protein
RifSed_csp2_16ft_3_scaffold_10522_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10952..11230)
DNA (279bp) protein (93aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
CRISPR-associated endonuclease Cas1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HGN5_METFS
CRISPR-associated endonuclease Cas1
Displaying 14 items

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