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RifSed_csp2_16ft_3_scaffold_4692_21

Organism: RifSed_csp2_16ft_3_Methanoperedens_45_12

near complete RP 32 / 55 MC: 3 BSCG 28 / 51 ASCG 37 / 38 MC: 1
Location: comp(15080..15886)

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 51.1
  • Coverage: 268.0
  • Bit_score: 276
  • Evalue 3.40e-71
tRNA pseudouridine synthase A (EC:4.2.1.70) similarity KEGG
DB: KEGG
  • Identity: 46.8
  • Coverage: 265.0
  • Bit_score: 246
  • Evalue 4.50e-63
tRNA pseudouridine synthase A Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=TRUA_METAC similarity UNIREF
DB: UNIREF100
  • Identity: 46.0
  • Coverage: 265.0
  • Bit_score: 246
  • Evalue 1.60e-62

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Taxonomy

Candidatus Methanoperedens nitroreducens → Candidatus Methanoperedens → Methanosarcinales → Methanomicrobia → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 807
ATGAGAATCGCTCTCAAGCTTGCATATCTTGGGACGGAATACTACGGATTTCAGACACAGCCCGGCGTTCCCACAATAGAAGGAAAGCTCCTGAAGGCGATGAAAGAACTTGGAGCACTCAAGAATCCCTCAAAAGCAAGATACTCTGCTGCTGGAAGAACAGACAGGGGAGTGCATGCACTGGGTCAGGTGATAGCCTTTGATTCAGAGAACCCGGATGCTTCTGCACCGCGTGCGCTCAACAGCAAACTCACGCATATCTGGGCTTATGCATGGGCAGAGGTGAACAGTGACTTCAATGCAAGGAAATCTGCACAGGAAAGAGAGTACAGGTATATGCAGTGGGGTGAGGGACTTGATTTTGACAAAATAAAAGACGCAGCCTCGATTTTTTCAGGTTCACACGATTTCAGGAATTTTGCAACACCAGAACCTGGAAAGCCAACTGCCTGCGATATAAGAAAGATCTCCATTCAAAAGCATGGAGAATGGATCTATCTTGACATCGTAGCGAACAGGTTCATATGGCATATGGTCAGGAAGATCGCCACTGCCCTGAAACTCATAGGGAAAGGTGAAAAAGACAGAGACTGGCTTGAGAGAATGCTCGATTGCTCTATCAGCGACAGGCTTGAGCCTCAGGGTCCGCACGGTTTGATCTTAATGGATGTAAGGTATCCTGGCATCAAATGGACCATTGACAGGTATGCAAGGAACAGGGTACTTGAGGAGATGCATGAACTTTTCATCAATCATGAGATAACTGCAAAGATGCTGAAAGAGATGGAAAATGGAATGCAAGAGTAA
PROTEIN sequence
Length: 269
MRIALKLAYLGTEYYGFQTQPGVPTIEGKLLKAMKELGALKNPSKARYSAAGRTDRGVHALGQVIAFDSENPDASAPRALNSKLTHIWAYAWAEVNSDFNARKSAQEREYRYMQWGEGLDFDKIKDAASIFSGSHDFRNFATPEPGKPTACDIRKISIQKHGEWIYLDIVANRFIWHMVRKIATALKLIGKGEKDRDWLERMLDCSISDRLEPQGPHGLILMDVRYPGIKWTIDRYARNRVLEEMHELFINHEITAKMLKEMENGMQE*