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RifSed_csp2_16ft_3_scaffold_4692

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_4692_1
unknown

Not on your lists

1..216
DNA (216bp) protein (72aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4692_2
unknown

Not on your lists

comp(436..1170)
DNA (735bp) protein (245aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4692_3
Methanosarcina sp. 1.H.A.2.2, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1311..2843)
DNA (1533bp) protein (511aa)
Uncharacterized protein {ECO:0000313|EMBL:KKH45355.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 1.H.A.2.2.;"
RifSed_csp2_16ft_3_scaffold_4692_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3174..3341
DNA (168bp) protein (56aa)
Uncharacterized protein Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YZ20_METPS
Uncharacterized protein {ECO:0000313|EMBL:KCZ71335.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4692_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3344..3634
DNA (291bp) protein (97aa)
Looped-hinge helix DNA binding domain, AbrB family {ECO:0000313|EMBL:KCZ71334.1}; EC=3.11.1.2 {ECO:0000313|EMBL:KCZ71334.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Uncharacterized protein Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YZ21_METPS
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4692_6
unknown

Not on your lists

4004..4531
DNA (528bp) protein (176aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4692_7
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4563..4784
DNA (222bp) protein (74aa)
hypothetical protein Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI0003679CE1
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4692_8
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4777..5025
DNA (249bp) protein (83aa)
YcfA-like protein Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WME3_METH6
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4692_9
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

comp(5417..5779)
DNA (363bp) protein (121aa)
Uncharacterized protein Tax=Desulfitobacterium hafniense RepID=B8FPG9_DESHD
Uncharacterized protein {ECO:0000313|EMBL:KKW00737.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4692_10
GWB1_OD1_57_6, Parcubacteria, Bacteria

Not on your lists

5931..6080
DNA (150bp) protein (50aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW46240.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_57_6.;"
RifSed_csp2_16ft_3_scaffold_4692_11
unknown

Not on your lists

comp(6212..6628)
DNA (417bp) protein (139aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4692_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(6735..7568)
DNA (834bp) protein (278aa)
Xylose isomerase domain protein TIM barrel Tax=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) RepID=A6VJS6_METM7
xylose isomerase domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4692_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7601..9409)
DNA (1809bp) protein (603aa)
tRNA-guanine transglycosylase {ECO:0000313|EMBL:KCZ72358.1}; EC=2.4.2.- {ECO:0000313|EMBL:KCZ72358.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
archaeosine tRNA-ribosyltransferase type 2 (EC:2.4.2.-)
Archaeosine tRNA-ribosyltransferase type 2 Tax=Methanosarcina mazei Tuc01 RepID=M1QIC1_METMZ
RifSed_csp2_16ft_3_scaffold_4692_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9406..10857)
DNA (1452bp) protein (484aa)
tRNA-guanine(15) transglycosylase {ECO:0000256|HAMAP-Rule:MF_01634}; EC=2.4.2.48 {ECO:0000256|HAMAP-Rule:MF_01634};; 7-cyano-7-deazaguanine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01634}; Archaeal tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_01634}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
archaeosine tRNA-ribosyltransferase type 1 (EC:2.4.2.-)
tRNA-guanine(15) transglycosylase Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KUZ2_METHD
RifSed_csp2_16ft_3_scaffold_4692_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10958..11578
DNA (621bp) protein (207aa)
UPI0003D1C7E0 related cluster Tax=unknown RepID=UPI0003D1C7E0
Multimeric flavodoxin WrbA {ECO:0000313|EMBL:KCZ70316.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
NADPH-dependent FMN reductase
RifSed_csp2_16ft_3_scaffold_4692_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11575..12138
DNA (564bp) protein (188aa)
Archaeoflavoprotein AfpA Tax=Methanocaldococcus sp. (strain FS406-22) RepID=D3S5K3_METSF
Archaeoflavoprotein AfpA {ECO:0000313|EMBL:KCZ70315.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
archaeoflavoprotein
RifSed_csp2_16ft_3_scaffold_4692_17
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(12135..12503)
DNA (369bp) protein (123aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4692_18
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

12637..12882
DNA (246bp) protein (82aa)
Hypothetical membrane protein Tax=uncultured archaeon RepID=D1J984_9ARCH
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4692_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(12903..13874)
DNA (972bp) protein (324aa)
Uncharacterized protein Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BT14_METCG
Putative membrane-bound metal-dependent hydrolase {ECO:0000313|EMBL:KCZ70490.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4692_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13874..15067)
DNA (1194bp) protein (398aa)
Quinolone resistance protein NorA Tax=Bacillus cereus VDM053 RepID=R8PMY7_BACCE
Arabinose efflux permease family protein {ECO:0000313|EMBL:KCZ70491.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
sugar (and other) transporter family protein
RifSed_csp2_16ft_3_scaffold_4692_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15080..15886)
DNA (807bp) protein (269aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
tRNA pseudouridine synthase A (EC:4.2.1.70)
tRNA pseudouridine synthase A Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=TRUA_METAC
RifSed_csp2_16ft_3_scaffold_4692_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15893..16855)
DNA (963bp) protein (321aa)
O-methyltransferase family 2 Tax=Pelosinus fermentans RepID=I8RIA2_9FIRM
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:KCZ71157.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
O-methyltransferase family 2
RifSed_csp2_16ft_3_scaffold_4692_23
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

17040..17279
DNA (240bp) protein (80aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4692_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17540..18049
DNA (510bp) protein (170aa)
Uncharacterized protein Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BWY4_METCG
Uncharacterized protein {ECO:0000313|EMBL:KCZ72421.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4692_25
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(18065..18286)
DNA (222bp) protein (74aa)
Uncharacterized protein {ECO:0000313|EMBL:GAN34354.1}; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
Pirin domain protein bin=GWC2_Nitrospirae_57_13 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
Pirin domain-containing protein
RifSed_csp2_16ft_3_scaffold_4692_26
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

18361..18987
DNA (627bp) protein (209aa)
PyrE-like protein Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WMW4_METH6
Phosphoribosyltransferase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4692_27
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

18992..19501
DNA (510bp) protein (170aa)
Putative membrane-bound metal-dependent hydrolase (DUF457) {ECO:0000313|EMBL:KCZ71350.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_4692_28
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19498..20946
DNA (1449bp) protein (483aa)
Probable cobyric acid synthase Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=COBQ_METAC
Probable cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Cobyric acid synthase
RifSed_csp2_16ft_3_scaffold_4692_29
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

20943..21884
DNA (942bp) protein (314aa)
Translation initiation factor 2B, subunit 2 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W0H9_UNCMA
Ribose-1,5-bisphosphate isomerase, e2b2 family {ECO:0000313|EMBL:KCZ71348.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
eif2b2; translation initiation factor IF-2B subunit delta
RifSed_csp2_16ft_3_scaffold_4692_30
unknown

Not on your lists

22022..22240
DNA (219bp) protein (73aa)

This feature has no annotations

Displaying items 1-30 of 31 in total

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