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RifSed_csp1_16ft_3_scaffold_13763

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_16ft_3_scaffold_13763_1
Peptococcaceae bacterium BRH_c4b, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..923)
DNA (921bp) protein (307aa)
Calcium/proton exchanger Tax=Clostridium intestinale URNW RepID=U2NSY1_9CLOT
Cation transporter {ECO:0000313|EMBL:KJS16876.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4b.;"
cax; calcium/proton exchanger
RifSed_csp1_16ft_3_scaffold_13763_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(997..1536)
DNA (540bp) protein (180aa)
Carbonic anhydrase, gamma class (EC:4.2.1.1)
Carbonate dehydratase Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TRS1_METAC
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase {ECO:0000313|EMBL:KCZ71673.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_16ft_3_scaffold_13763_3
unknown

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comp(1564..2112)
DNA (549bp) protein (183aa)

This feature has no annotations

RifSed_csp1_16ft_3_scaffold_13763_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2109..2645)
DNA (537bp) protein (179aa)
Uncharacterized protein Tax=Haloarcula californiae ATCC 33799 RepID=M0JT83_9EURY
Putative component of anaerobic dehydrogenase {ECO:0000313|EMBL:KCZ73326.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
cytoplasmic chaperone TorD family protein
RifSed_csp1_16ft_3_scaffold_13763_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2693..3847)
DNA (1155bp) protein (385aa)
Hdr-like menaquinol-oxidizing enzyme, subunit B (HmeB) Tax=uncultured sulfate-reducing bacterium RepID=Q3IBH9_9BACT
Polysulfide reductase {ECO:0000313|EMBL:KCZ73337.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
polysulfide reductase NrfD
RifSed_csp1_16ft_3_scaffold_13763_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3858..4517)
DNA (660bp) protein (220aa)
Fe-S-cluster-containing hydrogenase subunit {ECO:0000313|EMBL:KCZ73338.1}; EC=1.2.7.- {ECO:0000313|EMBL:KCZ73338.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Molybdopterin oxidoreductase iron-sulfur binding subunit Tax=uncultured candidate division OP1 bacterium RepID=H5SP32_9BACT
oxidoreductase, iron-sulfur cluster-binding subunit
RifSed_csp1_16ft_3_scaffold_13763_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(4527..7037)
DNA (2511bp) protein (837aa)
hypothetical protein Tax=Bacillus massiliosenegalensis RepID=UPI0002EFD726
Anaerobic dehydrogenase, typically selenocysteine-containing {ECO:0000313|EMBL:KCZ73339.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
molybdopterin oxidoreductase
RifSed_csp1_16ft_3_scaffold_13763_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(7266..7586)
DNA (321bp) protein (107aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_16ft_3_scaffold_13763_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(7593..7901)
DNA (309bp) protein (103aa)
Tungsten formylmethanofuran dehydrogenase, subunit E (FwdE) Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O30060_ARCFU
fwdE; tungsten formylmethanofuran dehydrogenase subunit E
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_16ft_3_scaffold_13763_10
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(7913..9121)
DNA (1209bp) protein (403aa)
Molybdenum cofactor biosynthesis protein (MoeA-3) Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O30076_ARCFU
moeA-3; molybdenum cofactor biosynthesis protein A
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_16ft_3_scaffold_13763_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9165..10091
DNA (927bp) protein (309aa)
Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PQG9_DESSD
Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:KCZ73332.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein
RifSed_csp1_16ft_3_scaffold_13763_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10069..10842
DNA (774bp) protein (258aa)
PAS domain S-box {ECO:0000313|EMBL:KCZ73331.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KCZ73331.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Two-component hybrid sensor and regulator Tax=Methanolobus psychrophilus R15 RepID=K4MAC9_9EURY
two-component hybrid sensor and regulator
RifSed_csp1_16ft_3_scaffold_13763_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10857..11834
DNA (978bp) protein (326aa)
PAS domain S-box {ECO:0000313|EMBL:KCZ73331.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KCZ73331.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like bin=GWB2_Nitrospirae_rel_47_37 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
histidine kinase
RifSed_csp1_16ft_3_scaffold_13763_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11812..12147
DNA (336bp) protein (112aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI000372F3D7
Response regulator {ECO:0000313|EMBL:KCZ73330.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
pilR; transcriptional regulatory protein pilR
Displaying 14 items

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