ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_2114_16

Organism: PLM1_60_b1_sep16_Thaumarchaeota_Marine_Group_I_35_23

near complete RP 32 / 55 MC: 2 BSCG 21 / 51 MC: 1 ASCG 38 / 38
Location: comp(12106..12444)

Top 3 Functional Annotations

Value Algorithm Source
UPF0060 membrane protein MSBR3_1306 {ECO:0000256|HAMAP-Rule:MF_00010}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.6
  • Coverage: 105.0
  • Bit_score: 163
  • Evalue 1.40e-37
UPF0060 membrane protein Mpet_2032 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized similarity UNIREF
DB: UNIREF100
  • Identity: 63.4
  • Coverage: 112.0
  • Bit_score: 162
  • Evalue 1.30e-37
Protein of unknown function UPF0060 similarity KEGG
DB: KEGG
  • Identity: 61.1
  • Coverage: 108.0
  • Bit_score: 155
  • Evalue 5.70e-36

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Methanosarcina barkeri → Methanosarcina → Methanosarcinales → Methanomicrobia → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 339
ATGAGTGCTACTATCATCACTATTACTTCAGTTGGACTGTTTCTCCTAGCAGCACTTGCTGAAATTGGTGGAGGATATTTAGTCTGGTTGTGGATAAGACAGAAAAAGAAAATAATCTTTGGTATTGTTGGTGGAATCATACTTTTTACTTACGGTATAATCCCTACACTGCAACCCTCAAATTTTGGCAGGATATATGCTGCTTACGGAGGATTTTTTATTATTTCTTCAATTTTATGGGGAATGATGGTAGACAAAAAGAGACCAGATAAATTTGAAATAATAGGCTCTATCGTAGCAGTTTTAGGAGCAGCAATAATATTTTATGCGCCAAGATAG
PROTEIN sequence
Length: 113
MSATIITITSVGLFLLAALAEIGGGYLVWLWIRQKKKIIFGIVGGIILFTYGIIPTLQPSNFGRIYAAYGGFFIISSILWGMMVDKKRPDKFEIIGSIVAVLGAAIIFYAPR*