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This organism can only be binned in the context of its binning project SCN18_26_2_15_R2_B. Please contact the project owner (rohansach@berkeley.edu) to become a member and gain access.

PLM4_90_b2_sep16_scaffold_3790

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b2_sep16_scaffold_3790_1
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(1..474)
DNA (474bp) protein (158aa)
UPF0292 protein MTCT_0807 Tax=Methanothermobacter thermautotrophicus CaT2 RepID=T2GHP2_METTF
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_3790_2
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(481..1497)
DNA (1017bp) protein (339aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosyl-tRNA synthetase Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N2X8_9ARCH
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_3790_3
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(1561..1773)
DNA (213bp) protein (71aa)
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_3790_4
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(2084..3778)
DNA (1695bp) protein (565aa)
Phenylalanine--tRNA ligase beta subunit Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AEN0_PYRYC
phenylalanyl-tRNA synthetase subunit beta
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_3790_5
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(3780..5297)
DNA (1518bp) protein (506aa)
Phenylalanine--tRNA ligase alpha subunit Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LJ36_THEBM
phenylalanyl-tRNA synthetase subunit alpha
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_3790_6
RBG_16_Archaea_50_20_curated, Archaea

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5843..6355
DNA (513bp) protein (171aa)
Tryptophan--tRNA ligase bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
trpS; tryptophanyl-tRNA synthetase
Tax=RBG_16_Archaea_50_20_curated
PLM4_90_b2_sep16_scaffold_3790_7
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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6613..6957
DNA (345bp) protein (115aa)
Tryptophan--tRNA ligase Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YYF9_METPS
trpS; tryptophanyl-tRNA synthetase
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_3790_8
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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7216..8121
DNA (906bp) protein (302aa)
methionine aminopeptidase, type ii (EC:3.4.11.18)
Methionine aminopeptidase Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GW93_METFV
Tax=RBG_16_Bathyarchaeota_48_13_curated
PLM4_90_b2_sep16_scaffold_3790_9
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(8118..8528)
DNA (411bp) protein (137aa)
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_3790_10
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(8542..9687)
DNA (1146bp) protein (382aa)
Putative uncharacterized protein Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N9Z1_9ARCH
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_3790_11

Not on your lists

comp(10094..10207)
DNA (114bp) protein (38aa)
YHS domain-containing protein Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KQT9_ARCVS
Marine sediment metagenome DNA, contig: S01H4_C01066 {ECO:0000313|EMBL:GAG61553.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
Displaying 11 items

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