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PLM4_90_b2_sep16_scaffold_880

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b2_sep16_scaffold_880_1
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..956
DNA (954bp) protein (318aa)
Aldehyde ferredoxin oxidoreductase Tax=Desulfotomaculum nigrificans DSM 574 RepID=F0DNA1_9FIRM
aldehyde:ferredoxin oxidoreductase
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
PLM4_90_b2_sep16_scaffold_880_2
RIFOXYA2_FULL_Elusimicrobia_53_38_curated, Elusimicrobia, Bacteria

Not on your lists

1216..1980
DNA (765bp) protein (255aa)
udp-1; Uridine phosphorylase (udp) (EC:2.4.2.3)
Purine or other phosphorylase family 1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L4H5_9BACI
Tax=RIFOXYA2_FULL_Elusimicrobia_53_38_curated
PLM4_90_b2_sep16_scaffold_880_3
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(2023..2214)
DNA (192bp) protein (64aa)
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_4
unknown

Not on your lists

2420..2806
DNA (387bp) protein (129aa)

This feature has no annotations

PLM4_90_b2_sep16_scaffold_880_5
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(2892..3248)
DNA (357bp) protein (119aa)
hypothetical protein Tax=unclassified Crenarchaeota RepID=UPI0003782723
transcription regulator
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_6
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(3318..4574)
DNA (1257bp) protein (419aa)
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
S-adenosyl-L-homocysteine hydrolase Tax=Sulfolobus islandicus RepID=UPI0003660EC5
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_7
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

4774..5862
DNA (1089bp) protein (363aa)
Putative uncharacterized protein bin=GWC2_Nitrospirae_57_13 species=Methanosaeta thermophila genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
aminoglycoside phosphotransferase
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_8
unknown

Not on your lists

5946..6095
DNA (150bp) protein (50aa)

This feature has no annotations

PLM4_90_b2_sep16_scaffold_880_9
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

6092..6493
DNA (402bp) protein (134aa)
Uncharacterized protein Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8DZK6_DICTD
hypothetical protein
Tax=CG_Woesearch_02
PLM4_90_b2_sep16_scaffold_880_10
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

6490..7095
DNA (606bp) protein (202aa)
cysC; putative adenylylsulfate kinase (APS kinase) (EC:2.7.1.25)
Putative adenylylsulfate kinase (APS kinase) Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W1B7_UNCMA
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_11
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(7182..7793)
DNA (612bp) protein (204aa)
uridine monophosphate synthetase (EC:4.1.1.23 2.4.2.10)
PREDICTED: uridine 5''''-monophosphate synthase Tax=Microtus ochrogaster RepID=UPI00038C4C07
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_12
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists


7980..8993
DNA (1014bp) protein (338aa)
50S ribosomal protein L3 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TAY3_9ARCH
50S ribosomal protein L3
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_13
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists


9007..9738
DNA (732bp) protein (244aa)
50S ribosomal protein L4 Tax=Methanobacterium formicicum DSM 3637 RepID=K2RCD6_METFO
rpl4p; 50S ribosomal protein L4P
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_14
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists


9738..9998
DNA (261bp) protein (87aa)
50S ribosomal protein L23P Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=RL23_PYRHO
rplW; 50S ribosomal protein L23
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_15

Not on your lists


10020..10796
DNA (777bp) protein (259aa)
50S ribosomal protein L2 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7U4P9_9ARCH
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; species="Archaea; Crenarchaeota; miscellaneous Crenarchaeota group; environmental samples.;" source="uncultured miscellaneous Crenarchaeota group.;"
rpl2p; 50S ribosomal protein L2
PLM4_90_b2_sep16_scaffold_880_16
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists


10827..11231
DNA (405bp) protein (135aa)
30S ribosomal protein S19P Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AFU9_PYRYC
30S ribosomal protein S19P
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_17
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(11250..11690)
DNA (441bp) protein (147aa)
Putative uncharacterized protein Tax=Ignisphaera aggregans (strain DSM 17230 / JCM 13409 / AQ1.S1) RepID=E0SRE0_IGNAA
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_18
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(11728..12048)
DNA (321bp) protein (107aa)
30S ribosomal protein S27ae Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7T8X4_9ARCH
30S ribosomal protein S27ae
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_19

Not on your lists

comp(12057..12371)
DNA (315bp) protein (105aa)
30S ribosomal protein S24e Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=RS24_METMA
Marine sediment metagenome DNA, contig: S06H3_S06103 {ECO:0000313|EMBL:GAI29442.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rps24e; 30S ribosomal protein S24
PLM4_90_b2_sep16_scaffold_880_20
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(12414..12857)
DNA (444bp) protein (148aa)
UPF0218 protein PYRAB16870 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=Y1687_PYRAB
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_21
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(12949..13134)
DNA (186bp) protein (62aa)
DNA-directed RNA polymerase subunit E'' (EC:2.7.7.6)
Transcription elongation factor Spt4 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7T2F6_9ARCH
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_22
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists


comp(13131..13709)
DNA (579bp) protein (193aa)
rpoE'; DNA-directed RNA polymerase, subunit E` (EC:2.7.7.6)
DNA-directed RNA polymerase subunit E Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7T895_9ARCH
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_23
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(13731..14156)
DNA (426bp) protein (142aa)
UPI0003D19FA5 related cluster Tax=unknown RepID=UPI0003D19FA5
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_24
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists


comp(14158..15402)
DNA (1245bp) protein (415aa)
Translation initiation factor 2 subunit gamma Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BF40_METIK
translation initiation factor 2 subunit gamma
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_25
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists


comp(15475..15924)
DNA (450bp) protein (150aa)
30S ribosomal protein S6e Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RI14_ARCPA
30S ribosomal protein S6e
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_26
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

16065..16520
DNA (456bp) protein (152aa)
Uncharacterized protein Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LMD8_THEBM
Major facilitator superfamily permease
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_27
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

16517..17104
DNA (588bp) protein (196aa)
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_28
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(17134..18588)
DNA (1455bp) protein (485aa)
fae; formaldehyde-activating protein (EC:4.3.-.-)
Bifunctional enzyme Fae/Hps Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IA85_METCZ
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_880_29
unknown

Not on your lists

18919..19104
DNA (186bp) protein (62aa)

This feature has no annotations

PLM4_90_b2_sep16_scaffold_880_30
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(19101..20636)
DNA (1536bp) protein (512aa)
Carboxypeptidase Taq (EC:3.4.17.19)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI0003655B3B
Tax=RBG_13_Bathyarchaeota_46_16b_curated
Displaying 30 items

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