ggKbase home page

PLM4_90_b2_sep16_scaffold_2945

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b2_sep16_scaffold_2945_1
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

3..515
DNA (513bp) protein (171aa)
Histone deacetylase Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S3J0_FERPA
histone deacetylase
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b2_sep16_scaffold_2945_2
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

544..1722
DNA (1179bp) protein (393aa)
Class V aminotransferase bin=GWC2_Proteo_65_14_Ab886 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
isopenicillin N epimerase
Tax=RBG_16_Bathyarchaeota_48_13_curated
PLM4_90_b2_sep16_scaffold_2945_3
Sulfolobus tokodaii, Sulfolobus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

1754..2545
DNA (792bp) protein (264aa)
Uncharacterized protein Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=Q96XA1_SULTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB67727.1}; species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus.;" source="Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7).;"
PLM4_90_b2_sep16_scaffold_2945_4
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2547..3287)
DNA (741bp) protein (247aa)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium paludis (strain DSM 25820 / JCM 18151 / SWAN1).;"
Probable L-aspartate dehydrogenase Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D1T5_METSW
L-aspartate dehydrogenase
PLM4_90_b2_sep16_scaffold_2945_5
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists


comp(3303..4949)
DNA (1647bp) protein (549aa)
Valine--tRNA ligase Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=SYV_METKA
ValS; valyl-tRNA synthetase
Tax=RBG_16_Bathyarchaeota_48_13_curated
PLM4_90_b2_sep16_scaffold_2945_6
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(4952..5671)
DNA (720bp) protein (240aa)
Valine--tRNA ligase Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RX04_THEPD
Suspect SCG annotation. See neighboring gene [PLM4_90_b2_sep16_scaffold_2945_5].
valyl-tRNA synthetase
Tax=RBG_16_Bathyarchaeota_48_13_curated
PLM4_90_b2_sep16_scaffold_2945_7
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

5878..6399
DNA (522bp) protein (174aa)
Proton-coupled thiamine transporter YuaJ Tax=uncultured prokaryote RepID=H5SLW5_9ZZZZ
putative proton-coupled thiamine transporter YuaJ
Tax=RBG_16_Thaumarchaeota_49_8_curated
PLM4_90_b2_sep16_scaffold_2945_8

Not on your lists

comp(6439..6819)
DNA (381bp) protein (127aa)
Protein FdhD homolog Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7T3Q1_9ARCH
Marine sediment metagenome DNA, contig: S03H2_L07384 {ECO:0000313|EMBL:GAH41284.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Formate dehydrogenase subunit FdhD
PLM4_90_b2_sep16_scaffold_2945_9
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(6786..7133)
DNA (348bp) protein (116aa)
Formate dehydrogenase chain D (EC:1.2.1.2)
hypothetical protein Tax=Zymophilus raffinosivorans RepID=UPI000382D98B
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
PLM4_90_b2_sep16_scaffold_2945_10
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(7138..8013)
DNA (876bp) protein (292aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJV6_9BACT
hypothetical protein
Tax=RBG_13_Bathyarchaeota_38_9_curated
PLM4_90_b2_sep16_scaffold_2945_11

Not on your lists

comp(8093..9022)
DNA (930bp) protein (310aa)
hypothetical protein Tax=candidate division YNPFFA RepID=UPI0003757964
Uncharacterized protein {ECO:0000313|EMBL:KKM98477.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
serine/threonine-protein phosphatase
PLM4_90_b2_sep16_scaffold_2945_12
unknown

Not on your lists

comp(9038..9463)
DNA (426bp) protein (142aa)

This feature has no annotations

Displaying 12 items

View Taxonomy